Protein Info for PfGW456L13_2523 in Pseudomonas fluorescens GW456-L13

Annotation: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 PF00970: FAD_binding_6" amino acids 31 to 116 (86 residues), 41.9 bits, see alignment E=2.1e-14 PF08030: NAD_binding_6" amino acids 128 to 182 (55 residues), 25.8 bits, see alignment 2e-09 PF00175: NAD_binding_1" amino acids 131 to 227 (97 residues), 59.6 bits, see alignment E=9e-20 PF00111: Fer2" amino acids 276 to 350 (75 residues), 66.1 bits, see alignment E=4.5e-22

Best Hits

KEGG orthology group: None (inferred from 44% identity to mva:Mvan_4186)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293PZZ4 at UniProt or InterPro

Protein Sequence (360 amino acids)

>PfGW456L13_2523 Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) (Pseudomonas fluorescens GW456-L13)
MGTQQQNLTPAEHTTASVSLQVCAVIDETLDARSLVLDVPPALRERFRYKPGQFLSFRVP
FAGKLLTRCYSMASSPLADALPKVTVKRVDGGRVSNWMNEVQVGDWLEVLPPAGHFCLDP
QADTEKPLVLFGGGSGITPVFSILKSVLHSSRRPIKLIYANRDEASVIFKDELCQLIKAH
PDQLHVVHVLDSVQGFLTDHQVRHLLRGSAGGDYFICGPGPFMDTVERTLLAVGEAAERI
HVERFVSPPDPDELLAEEAVARAAAMDSQCEALIVELDGQQHEIACKPGDTLLQSCKAAG
LDVPSSCEEGFCGACMCVVREGEVQLARNDVLTPKELADGWTLACQSRPTGARVRLKFPD