Protein Info for PfGW456L13_2495 in Pseudomonas fluorescens GW456-L13

Annotation: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 PF02771: Acyl-CoA_dh_N" amino acids 6 to 125 (120 residues), 66.3 bits, see alignment E=4.8e-22 PF02770: Acyl-CoA_dh_M" amino acids 130 to 225 (96 residues), 80.7 bits, see alignment E=1.1e-26 PF00441: Acyl-CoA_dh_1" amino acids 238 to 386 (149 residues), 74.9 bits, see alignment E=1.2e-24

Best Hits

KEGG orthology group: None (inferred from 73% identity to gpb:HDN1F_27490)

Predicted SEED Role

"Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)" (EC 1.3.99.13)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.3.99.13

Use Curated BLAST to search for 1.3.99.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QPG0 at UniProt or InterPro

Protein Sequence (397 amino acids)

>PfGW456L13_2495 Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (Pseudomonas fluorescens GW456-L13)
MKISFSEQDERFRREVADWMSANLCGEFEALRFRGGPGDEHMFPEERKAWERKLAEGGWT
CVGWAPEHGGRGLSITQQVIFNEEYARAGGPGRMGHIGEGLAGPTIAAFGTVEQQQRFLP
GIVSGTSFWCQGYSEPGAGSDLASVKTRATLDEATGSWIINGQKVWTSLAHESDWCFVIA
RTEPGSVGHRGLSFLLVPMAQTEITVRPIEQLTGTSEFNEVFFDDARTDATNIIGAPGEG
WKIAMALLGFERGVSTLGQQMQFQNELNEIIAIAKTNGADRDPILRQRLAEAWSGLRIMR
YNSLRMLSGSQDGSLRKEATIYKLFWSTWHASLGKLAMDVLGAEAELLEAAPYQLTRLQS
LYLFSRADTLYGGSNEIQRNIIAERALGMPKEPRPRA