Protein Info for PfGW456L13_2424 in Pseudomonas fluorescens GW456-L13

Annotation: Phenylacetate-CoA oxygenase, PaaJ subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 PF01883: FeS_assembly_P" amino acids 23 to 83 (61 residues), 53.6 bits, see alignment E=2.2e-18 TIGR02159: phenylacetate-CoA oxygenase, PaaJ subunit" amino acids 31 to 177 (147 residues), 202.2 bits, see alignment E=2.3e-64 PF23451: Zn_ribbon_PaaD" amino acids 125 to 175 (51 residues), 84.4 bits, see alignment E=3.4e-28

Best Hits

KEGG orthology group: K02612, phenylacetic acid degradation protein (inferred from 83% identity to ppw:PputW619_2634)

Predicted SEED Role

"Phenylacetate-CoA oxygenase, PaaJ subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QMR3 at UniProt or InterPro

Protein Sequence (177 amino acids)

>PfGW456L13_2424 Phenylacetate-CoA oxygenase, PaaJ subunit (Pseudomonas fluorescens GW456-L13)
MQPGELIASDLGARPAQPTDLAAAWAILAEVMDPEVPVVSVVDLGIVRDLDWQAGHLHVV
VTPTYSGCPATEVIESDIREALELAGFKAPQLERKLTPAWTTDWISDSGRERLRAYGIAP
PEGSTSKRSLLGENPQVVCPQCGSAHTEVLSEFGSTACKALYRCVDCREPFDYFKCI