Protein Info for PfGW456L13_2392 in Pseudomonas fluorescens GW456-L13

Annotation: Pyoverdine efflux carrier and ATP binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 transmembrane" amino acids 285 to 305 (21 residues), see Phobius details amino acids 533 to 557 (25 residues), see Phobius details amino acids 586 to 610 (25 residues), see Phobius details amino acids 617 to 639 (23 residues), see Phobius details PF00005: ABC_tran" amino acids 26 to 174 (149 residues), 110.7 bits, see alignment E=1.4e-35 PF12704: MacB_PCD" amino acids 284 to 502 (219 residues), 153.7 bits, see alignment E=1.3e-48 PF02687: FtsX" amino acids 538 to 650 (113 residues), 65.4 bits, see alignment E=7.5e-22

Best Hits

Swiss-Prot: 92% identical to MACB1_PSEPF: Macrolide export ATP-binding/permease protein MacB 1 (macB1) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K05685, macrolide transport system ATP-binding/permease protein [EC: 3.6.3.-] (inferred from 92% identity to pfo:Pfl01_1856)

Predicted SEED Role

"Pyoverdine efflux carrier and ATP binding protein" in subsystem Siderophore Pyoverdine

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QJV6 at UniProt or InterPro

Protein Sequence (657 amino acids)

>PfGW456L13_2392 Pyoverdine efflux carrier and ATP binding protein (Pseudomonas fluorescens GW456-L13)
MHTPLIDLSDIRKAYGGGDAPEVHVLRGIDLSIHAGEFVAIVGASGSGKSTLMNILGCLD
RPTSGEYRFAGENVAALDSDELAWLRREAFGFVFQGYHLIPSGSAQENVEMPAIYAGTPA
AERHARAAALLDRLGLASRTGNRPHQLSGGQQQRVSIARALMNGGHIILADEPTGALDSH
SGAEVMALLDELASQGHVVILITHDREVAARAKRIIEIRDGEIISDSARENPTAQNSANP
GALQAVDLRKRLSEGAEATGAWKGELVDAVHAAWRVMWINKFRTALTLLGIIIGVASVVV
MLAVGEGSKRQVMAQMGAFGSNIIYLSGSAPNPRTPMGIVTLDEVAAIASLPQVMRIMPV
NGQEAGVRFGNLDHMSYVGGNDTNFPAIFNWPVVEGSYFTHADEQNAAAVAVIGHKVRTK
LLKDVANPIGQYILIENVPFQVVGVLAEKGASSGDSDSDDRIAIPYSAASVRLFGTHNPE
YIAIAAADARKVKETEKAIEQLMLRLHDGKRDFELTNNAAMIQAEARTQNTLSLMLGSIA
AISLLVGGIGVMNIMLMTVRERTREIGIRMATGARQRDILRQFLTEAVMLSVVGGLTGIA
LALIVGGVLIFSEVAVAFSLIAVLGAFGCALVTGVVFGYMPARKAARLDPVTALTSE