Protein Info for PfGW456L13_2385 in Pseudomonas fluorescens GW456-L13

Annotation: PvdE, pyoverdine ABC export system, fused ATPase and permease components

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 57 to 82 (26 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 242 to 265 (24 residues), see Phobius details amino acids 271 to 297 (27 residues), see Phobius details TIGR01194: cyclic peptide transporter" amino acids 6 to 549 (544 residues), 797.4 bits, see alignment E=3.5e-244 PF00664: ABC_membrane" amino acids 38 to 203 (166 residues), 35.5 bits, see alignment E=1.4e-12 PF00005: ABC_tran" amino acids 358 to 490 (133 residues), 94.2 bits, see alignment E=1.7e-30

Best Hits

KEGG orthology group: K06160, putative ATP-binding cassette transporter (inferred from 80% identity to ppw:PputW619_3540)

MetaCyc: 72% identical to ABC-type myristoylated ferribactin transporter (Pseudomonas aeruginosa PAO1)
7.4.2.-

Predicted SEED Role

"PvdE, pyoverdine ABC export system, fused ATPase and permease components" in subsystem Siderophore Pyoverdine

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293PZN5 at UniProt or InterPro

Protein Sequence (549 amino acids)

>PfGW456L13_2385 PvdE, pyoverdine ABC export system, fused ATPase and permease components (Pseudomonas fluorescens GW456-L13)
MTQPTRGAIGELLALLKPFRLIVAASIFLGMVGGLSVTVLLATINNALHSPHGLTQGVVA
LFGGLCLLALGSSICSDIGTNYVGQHIIARLRKTLGEKVLSAPIEQIERYRSHRLIPVLT
HDVDTISDFAFAFAPLAISLTVTLGCMGYLAMLSWPMFLMMVLAIAIGTGIQFYAQGKGI
QGFMAARDAEDDLQKHYNAIAGGAKELRIHRPRRQRMFVKGIQGTADFICNTQVRSINTF
VIAKTLGSMLFFVVIGLALALQSFWPSADQAVMSGFVLVLLYMKGPIEHLVSTLPIVSRA
RIAFRRIAELSSQFSSPEPHLLLNDNGIRPTVVDRLQLNNVSYAFPAAPGSDAFRLGPVN
LTIEQGDIIFIVGENGCGKTTLIKLLLGLYAPQQGSIQLNGQGIDAHNRDDYRQLFTTIF
ADYYLFDDVVQGDQHIPEDANAYLQRLEIAHKVSVRDGSFTTTDLSTGQRKRLALVNAWL
EERPVLVFDEWAADQDPTFRRIFYTELLPDLKRLGKTIIVISHDDRYFDMADQLVRMESG
RVVTERATA