Protein Info for PfGW456L13_2377 in Pseudomonas fluorescens GW456-L13

Annotation: Non-ribosomal peptide synthetase modules, pyoverdine??

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 3934 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 3742 to 3756 (15 residues), see Phobius details PF00668: Condensation" amino acids 50 to 490 (441 residues), 366.1 bits, see alignment E=7.8e-113 amino acids 1107 to 1534 (428 residues), 264.1 bits, see alignment E=6.6e-82 amino acids 1565 to 2000 (436 residues), 309.4 bits, see alignment E=1.2e-95 amino acids 2623 to 3056 (434 residues), 273 bits, see alignment E=1.3e-84 PF00501: AMP-binding" amino acids 516 to 870 (355 residues), 302.8 bits, see alignment E=1e-93 amino acids 2022 to 2371 (350 residues), 301.7 bits, see alignment E=2.2e-93 amino acids 3076 to 3430 (355 residues), 254.8 bits, see alignment E=3.7e-79 TIGR01733: amino acid adenylation domain" amino acids 537 to 945 (409 residues), 458.9 bits, see alignment E=3.5e-141 amino acids 2043 to 2445 (403 residues), 452.9 bits, see alignment E=2.3e-139 amino acids 3101 to 3504 (404 residues), 395.8 bits, see alignment E=5e-122 PF13193: AMP-binding_C" amino acids 929 to 1003 (75 residues), 25.5 bits, see alignment (E = 6.4e-09) amino acids 2429 to 2499 (71 residues), 38.1 bits, see alignment (E = 7.2e-13) amino acids 3488 to 3561 (74 residues), 37.4 bits, see alignment (E = 1.2e-12) PF00550: PP-binding" amino acids 1031 to 1091 (61 residues), 58.1 bits, see alignment (E = 2.6e-19) amino acids 2525 to 2585 (61 residues), 46.5 bits, see alignment (E = 1.1e-15) amino acids 3587 to 3649 (63 residues), 35.7 bits, see alignment (E = 2.5e-12) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1408 to 1557 (150 residues), 144.5 bits, see alignment (E = 6.3e-46) PF00975: Thioesterase" amino acids 3674 to 3923 (250 residues), 82.3 bits, see alignment 1.9e-26

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QM49 at UniProt or InterPro

Protein Sequence (3934 amino acids)

>PfGW456L13_2377 Non-ribosomal peptide synthetase modules, pyoverdine?? (Pseudomonas fluorescens GW456-L13)
MSAAPDRMMTLAQRFCGLSADARRALQQKMHAQGLTLELLPIPPRDRAVDTLPASYAQQR
LWFLKQMQPQATAYNLTGAFRLSGELNPEALAQTLSALVQRHEVLRTTFVFDDRQVLQKI
HPRMDAPLLEVSAGDEAELQRQIALNAEQPFDLHSGPLMRCRLIRLDAQQHVLVLTFHHI
VTDGGSLPILLQEFTRLYAQLSAGQTPQLPELGIQYADFARWQRLWLEAGEADRQLDYWR
VQLGREHPPLNLPTDRRRPAIPSLQGASVELEIPTALTAQLRELARREGCTLFMVLMAAL
QTLLHRYSGEQDIRVGVPIANRTRQDVENLLGFFVNTQVLRSQPRADRPFVQLLAEIKTA
ALGAQVHQDLPFEQLVDGLGVERSLSHTPLFQVMFNHQRDSGGPQRWDLPGLSVEPLIWD
EKTTKFDLMLDTVEGDEGIHASFVYATELFDASTIERLGRHWLNLLQAICTDSTVALADL
SMLDASEQQATLRDWNRTAGLNSDQANLLCAHQLIEAQAVAHPNNIAVTCDGVTLNYAEL
NRRANRIAHRLRERGVGPDVLVGIALERSLEMIVSLLAILKAGGAYVPLDPQYPQDRLAY
MLADSGTRLLLTDSALLPQLPLNEGIEVICLDHASDWLLEASADNLPNLTAPENLAYVIY
TSGSTGKPKGTLLPHSNLTRLFSATEHWFGFNAQDVWSLFHSYAFDFSVWEIFGALFYGG
KLVVVPHAVSRSPEDFARLLSDEGVTVLNQTPSAFRQLMPFACANAPDMSLRYVVFGGEA
LDVASLRPWYDAFDDRQPLLINMYGITETTVHVTYRPLSRADLDGANSSPLGEPIGDLRW
YVLDPRLNPVAKGCVGELYVGGAGLARGYHQRPDLTATRFVPDLFAAESGARLYRTGDLA
RYCADGSIEYAGRIDHQVKIRGFRIELGEIQDRLQSHPAIEQALVLAPQVNGSPQLVAWF
TASGDDSDLRHSLREYLQAGLPDYMVPAHLIKLDQWPLTGNGKLDRAALPKPDATLAQQA
YTAPMDELQTELAAIWQDVLKLERVGIDDNFFELGGDSIISIQVVSRARQAGIRITPRDL
FQHQTVQSLAKVAIRSAGLLIDQGPVRGEVLLTPIQHWFFEQDIEARHHWNQSLLLELRE
PLDSASLQQALAALVEHHDGLRLRLRQVDGVWQQAQAEQWNSAEVLWQRQAANADELLEL
CNAAQASLNLQDGPLLRALLVDMGAAGQRLLLVVHHLAVDGVSWRLLLEDLQTAYQQAQQ
SQPLRLPAKTSAYQAWAARLQSHAQSAVLASQASYWQDQYRDVQVQLPADNPQGSLASQH
AVSVETLLDSTLTRQLLQDAPAAYRTQVNDLLLTALARVLGNWTGQTSTLVKLEGHGRED
LFDDIDLTRTLGWFTSIFPVKLTPAGDLAASIKAVKEQLRAVPDKGIGFGILRYLADAGL
EDLPSPHVTFNYMGQFDASFDEQAPWRPARESGGAEQGASAELDRGLSINGQVYAGQLRL
SWTFSGDVFNPQTVKRLADAYALELQQLIEHCLSGAGGLTPSDVPLVRVDQAQLDALPLA
ASQIEDILPLSPMQQGMLFHSLFTPDAGAYIPQMRVDVQGLDVEAFRAAWQQTLQRHEVL
RAAFFSESNGSRPLQVILADATLPLTVLDWCDQPKVTEALDRLAEDDRLRGFDLTLAPLL
RLTLVQTADDRHHLIFTNHHILLDGWSTSQLFGEVLQRYCGIMPAPSVGGYRDYMTWLGT
RDRAACEAFWLEQLQSFTEPTRLAGALPGPVAGQGDAHRTLHLSLDRAATERLSGFARQT
RVTPNTVLQAAWLLLLQRYTGQQTVAFGATVSGRPSELQGIEQQIGLFINTLPVIATPHP
ERTVSQWIDEVQALNLKLREVEYTPLADVQRWAGHSGEALFDTLLVFENYPVAQALEEGN
ASALKFSGISNHDQTSFPLAIAAELGECLDLRFNYDTALFSAEAIEGLSTRLLALLDAMV
SAPQQPLGRLNLLDAAQTAQQIEGFNRTAQAWPDVRPVYQCFEAQVQQTPEAPALVFAGQ
TLSYRELNQQANRLAHYLRSQGVGAEVLVGIAAERSLELVIGLLAIMKAGGAYVPLDPDY
PRERLEHMFDDSGVHLLLTQRHLLEQLPIPPATTAICLDDMAGLLDGLGNENLPCVVELQ
SLAYMIYTSGSTGKPKGAANHHEALYNRLAWMQGAYPLDGRDTVLQKTPFSFDVSVWEFF
WPLMTGARLAVAEPGAHRDPAQLVSLIEQYQVSTLHFVPSMLQAFVQGEGFERCASLRQI
MCSGEALSADLQQSLFRVLPNVGLYNLYGPTEAAIDVTHWTCVDDGGFNVPIGQPIANLV
TYILDDSLQPQVQGCVGELYLGGIGLARGYHNRPELTAERFVASPFGEQGERLYRTGDLA
RYRADGVIEYVGRIDHQVKIRGLRIELGEIEACLLEHPSVREAVVIALDVGKSKQLVSYV
TGPVAVDPLKQHLRNALPEHMQPSHVLLLDQFPVTPNGKLDRRALPQPDLQVREYVAPRS
AVEATLQAVWQALFEVPQIGMHDNFFELGGDSIVSIQAVSRARKAGLSISPKDVFSHPTI
AELAAVAQPLTADQAVQTVFAPTANIELSDAQYQALELTADEVEDVYPLSPMQQGMLFHS
VQDGDSGLYVNQIEVGVRGVDGARFRAAWADAAQRHGILRTAFLWEGDKEPLQVVLRDAP
SLLTELDWRGLDDQPERVRQLALEERERGFSLNRAPLLRLLLVRLEDDRYRLIWTYHHIL
MDGWSVSRLIGEVLRHYSGEEHEPVAAYRDYIDWLGQQVAEASEAFWKDKLSNLEGATHL
ARALPVKAPQTGYHAIYTHLSAGETAGLQAFAQQQQVTLNTLVQAAWLLLLQRYTGQRTV
TFGATVSGRPETLNGSENMLGLFINTLPVVNTVPTEASVGDWLREIQAFNLDIRDFQQTP
LSDIQRWAGQGGQSLFDSIIVFENQPVDRTLREWNGDSLRFEDVSDFGLTSFAMDLMVSL
DEGLRIEYMHQRDQFDLATVEILRSHMESLMQRLCDDAGRAVGELGLLTQDEGRALDGEL
PVVAEGDETPVHELIRQRARLQPDHTALVLSYADRDAEQLSYAELDHRSDALAVHLLEQG
VQAEDVIGVFMERSLELVVSLLAVMKCGAAYVPLDPQYPQERLRYMMADSDMRLLLTQER
LCDSAQLNPGTAMVAVDRLNLDVDVAVPSSSVHAGQLAYLIYTSGSTGKPKSVAVAHGPL
SMHVQAIAELYEMDPDNRELHFMSFAFDGAHERWITALISGSTLVIRDNTLWTAEQTLAV
LHRQRISVACFPPAYLLQLAEHAELQGGDPPPVRIYCFGGDAVPDATFERVKHTLKPQFL
VNGYGPTETVVTPLLWKIAADGHCQAMYAPIGQRVGSRSLHVLDMDLNPLPVGMVGELYI
GGRGVARGYHRHPWQSAERFVADPFSTEGGRLYRTGDLVRRREDGVFDYVGRIDHQVKVR
GFRIELGEIEARLREQAGVNDALVVVRDNGQGPQLVGYVVAAQDDGLGPRCQAALRESLP
DYMVPTQVVVLPRFPLTPNGKLDRKALPDPAFTGRDYVAPRTPLEWALADIWQQVLGIEK
VGITDNFFELGGDSLRTLKVISKVRALNEPGFQLKLRDMMAKPTIAGLSGVDEQPLRQSP
QPLLLLNQVVNDQPPLFCLHAGFGTVFDYEPLARRLDGERTVYGVQCRMLLDRQWHDSSL
SQMAQDYVEAIRARQPQGPYHVLGWSLGGALALMVSDLFEQQGQRVAFVGLVDSFVPTQV
NAVASPDEWRTDLAEFLGATLGMDGEVIARVLSTESTGDHEAVARIIRAVIDSESDQASG
YALLGADELAQTFMVSTRMKALSRQVETLPIPQAELHCWWADGNPTAERATLERQQPRLS
KVQTVTAGHFDILQQEECLDAVVAALGREVVAQV