Protein Info for PfGW456L13_2374 in Pseudomonas fluorescens GW456-L13

Annotation: Non-ribosomal peptide synthetase modules, pyoverdine

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3068 transmembrane" amino acids 2843 to 2859 (17 residues), see Phobius details PF00668: Condensation" amino acids 47 to 496 (450 residues), 386.9 bits, see alignment E=2.5e-119 amino acids 1098 to 1520 (423 residues), 244.7 bits, see alignment E=3.4e-76 amino acids 1551 to 1977 (427 residues), 285.7 bits, see alignment E=1.3e-88 amino acids 2603 to 3030 (428 residues), 319.1 bits, see alignment E=9.6e-99 PF00501: AMP-binding" amino acids 518 to 865 (348 residues), 299.2 bits, see alignment E=8.3e-93 amino acids 1999 to 2352 (354 residues), 261 bits, see alignment E=3.4e-81 TIGR01733: amino acid adenylation domain" amino acids 538 to 938 (401 residues), 438 bits, see alignment E=3.2e-135 amino acids 2020 to 2428 (409 residues), 414.9 bits, see alignment E=3.3e-128 PF13193: AMP-binding_C" amino acids 922 to 995 (74 residues), 35.4 bits, see alignment (E = 3.5e-12) amino acids 2412 to 2492 (81 residues), 38.2 bits, see alignment (E = 4.7e-13) PF00550: PP-binding" amino acids 1023 to 1081 (59 residues), 56.7 bits, see alignment (E = 4.7e-19) amino acids 2520 to 2580 (61 residues), 55.4 bits, see alignment (E = 1.2e-18) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1391 to 1543 (153 residues), 156 bits, see alignment 7e-50

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3068 amino acids)

>PfGW456L13_2374 Non-ribosomal peptide synthetase modules, pyoverdine (Pseudomonas fluorescens GW456-L13)
MNAEDSLKLARRFIGLPLEKRQMFLAALHKEGVDFARFPIPASIEAEDRQALSYAQQRMW
FLWQLDPLSGAYNLPGAVRLTGCLNLSALEQAFASLVARHETLRTVFARQADDSLLQVPA
TAPLVIEQVDFSALPAEERERAVAETAEQQSVLPFDLSTGPLLRVTLLKLAGLEHVLLLT
LHHIVSDGWSMNVLIDEFIRCYDAFDAGTQPQLTPLPIQYSDYALWQRRWLEAGEQARQL
AYWQTQLGDEHPVLELPLDHSRPAMPSYRGTRYEFAVQAQLAEQLRSTAQKHNITLFMLL
LGAFNTLLHRYTGQTDIRVGVPIANRNRAEIEGLIGFFVNTQVLRTQLDGQTRVDDLLRA
IKETALGAQAHQDLPFERLVEALKLERSLSHTPLFQVMYNHQPHVADMASVSTASGLELG
SIDWQSRTTQFDLTLDTWEKGGKLHAALTYASDLFEADTIVRMARHWTRLLQAIVDDSTQ
KIGELPMLTADEQQVLVQDWNRTAEIYPVEQCMHQLIQAQARRTPGAPALVFGDRQLSYV
QLDARSNQLAHCLREQGVGPDVLVGICVERSLEMVIGLLAIHKAGGAYVPLDPEYPAERL
AYMIEDSAIGLLLTQSTLLGALPTEGVKVIALDQEQDWLDGYSESCPPVEVHPLNLAYVI
YTSGSTGKPKGAGNSHAALVNRLCWMQQAYRLDGSDSVLQKTPFSFDVSVWEFFWPLMTG
ARLVVAPPGAHREPARLIRLIGDHGISTLHFVPSMLQAFIHEPGVEACAGLKRIVCSGEA
LPLDAQLQVFKKLPGAGLYNLYGPTEAAIDVTHWTCIDEGADSVPIGRPIANLRTHVLDA
QLLPVPAGVAGELYLGGAGLARSYHRRPALSAERFVPCPFHDGARLYRTGDRVRQRADGV
IEYLGRLDHQVKLRGLRIELGEIETRLMQHALVREAVVLVQGGKHLVAYLVLENADTDAQ
WPQTLKAWLLDSLPEYMVPTYLMPLDALPVTANGKLDRKALPPPDATPQQAFVAPQDAMQ
IALAQIWQDVLGAEPVGLEDNFFELGGDSIISIQVVSRARQAGIRLSPRDLFQYQTVRSL
ALVAAFDSRSTVDQGPVSGEVILTPAQHYFFEQAIAQRQHWNQSLLLTPRDALNPEVLEP
ALVTVINHHDALRLRFIDGAEGWQQRHAAPVESAGLWQRRASSTEALTALCDEAQRSLDL
ASGPLLRALLISLDDGSQRLLLVVHHLAVDGVSWRVLLEDLQQAYRQVALPEKTSAYQAW
AAHLQQHAGTLPGQMPYWQAQLADARDLPCDNPQGSLQQRHGHKIESRLDAELTRQLLQQ
APAAYRTQVNDLLLTALARVICRWSGQGSTLIQLEGHGREDLSDDLDLSRTVGWFTSLFP
VRLQPEAGMVNSIKSIKEQLRAIPGKGLGYGLLRYLGEPAQRQALQDLPAPRITFNYLGQ
FDRQFDDAALFVPAPESGGQAQGDDAPLANWLTVEGQVYGGQLSLQWGFSRDMFAESTVQ
RLADAYTEELKTLIEHCCATAPGQVTPSDFPLARITQAQLDALPVAAPAIEDVYPLTPMQ
QGMLFHTLYEPQAEAYINQLRLDIQGLELAAFGRAWQAAINRHDILRSSFHWLGLECAHQ
VIHRQIDLQLQVIEAADIDLDALAAEERSRGFELGTAPLFRLLLVRRGSEGWHLIHTSHH
ILMDGWSNAQLLGEVIQHYAGQTLARPLGQYRDYLGWIQQQPLLAAEQFWRQALAPLETP
TLLAQALPTPAQGYGMGEHQLTLESVALQRLSDFARQQKITLNTLLQGAWGLLLQRYTGQ
SCVAFGATIAGRSAPLPGIEQQLGLFINTLPIIAAPQAGQSVAQWLSDLQALNLSLREFE
HVPLYDIQGWAGQQGALFDSLLVFENFPVAEALKQGAPAGLTFGALHNHEITSYPLTLGI
EVGASLRLDFSFDRTRFSAAQISQLGASLLQVLEQFVAQPQQALGAVSLLDAQAQAMVLA
CSRPPAPPIDSPLLAHQRFEQQAARTPDALAVMVGDERLTYAQLNAQANQLAHRLRAQGV
APGQRVGLSVRRNGQMIVSLMAILKSGAGYVPLDPDYPAERLAYMIEDSGMDLLLAQPGL
LADVALPQGLPRLALEPGADTGYSTDNLINLASAEDLAYLIYTSGSTGRPKGVCLAHAAL
REFCVIAAHYSQLTPQDRVLQFATFSFDGFVEQCYPPLCVGAALVMRGDELWDTDTLYRQ
IIEHGVTLADLPAAYWFLLSQEWSAHPQRDKGRLRQVHVGGEAMSLEGLKLWHAAGLGDV
RLLNTYGPTEATVVSSTHECTLADTRNHIGVPIGKALPGRALYVLDSEGHLLPTGCVGEL
CIGGDAGLAQCYHQRPGLSAERFIADPFSSTQGARLYRSGDLARYREDGALEYLGRIDHQ
VKIRGFRVELGELEAHLQGLPMISEAAVLVHEGVGGKQLIGYVVLASDEWLNSDPRQLTD
TVRRALGERLPDYMLPAQLVLLAALPLNRNGKLDRAALPAPQVWEADVGSAPQGALEIEL
AQIWRQVLQVNRVDRENSFFELGGHSLLATQIISQIRQRLGLSVSLRSLFEHPRLEDFAA
QVQALQHSCERPALVADTSGERQPLSFAQQRLWFLWNLEPDSSMYNMPGALRLRGELNLD
ALRRTFETLVQRHAVLRTTFYEQDGQAWQRVHRQLPLSFEASDLRHRPAPDVEAQQLARE
EVARPFDLRHGPLLRVRVLRVADDEHVLLLTVHHIVADDWSFRVLINEFVTLYPTLNRGQ
TPQLPAHSVQYADFAKWQRQWLEQGGELQRQLDYWQQRLAEPQAVLELPADGDRRTAQEG
ASAHFTFSAELSQQVRDFAQQRDLSLFMLLLAGFTLVLRQRTEVSRVRIGTDIANRNQAE
LEEMVGFFVNQLVLQVEVDAEQSAAQLLEACRRAVLEASDHQDLPFERLVEALRLPRRAG
RSPLFDIKLIYQEGVGRLSSMEGLEVEDFPSGRQAAEIGMVAAFYNDAEHIHLSFETPVG
QYLASTLECLFEQIRAVLQTLIRADGVQVGELLDLAADVQRRADARLNEQRKALLGGAMA
IKRRSAHR