Protein Info for PfGW456L13_2348 in Pseudomonas fluorescens GW456-L13

Annotation: 2-Oxobutyrate oxidase, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 PF14226: DIOX_N" amino acids 21 to 144 (124 residues), 94 bits, see alignment E=1e-30 PF03171: 2OG-FeII_Oxy" amino acids 192 to 284 (93 residues), 76 bits, see alignment E=2.6e-25

Best Hits

KEGG orthology group: K06892, (no description) (inferred from 71% identity to pmk:MDS_3053)

Predicted SEED Role

"2-Oxobutyrate oxidase, putative" in subsystem Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QJP3 at UniProt or InterPro

Protein Sequence (356 amino acids)

>PfGW456L13_2348 2-Oxobutyrate oxidase, putative (Pseudomonas fluorescens GW456-L13)
MPDNKNNSASTDTHKANFNSIPEVNIAGLFSVELEHRLAVAEQLGRAASEVGFLYITHHG
IDPQLIANLRQAAKDFFDQPFDTKMQHYIGTSQTHKGFVPEGEEVYSKGKPDHKEAFDVG
FEVPADDPLVLTNTPLLGPNDWPQLQGFKASVQAYYEAIFALGRRLFGGFALTLGLEENY
FDSLVTRPPSKLRLIHYPFDGAAHDAPGLGAHTDYECFTILLADKPGLEVMNNLGQWIDA
PPIADAFVVNIGDMLEVMTAGAFVATAHRVRSVKEERYSFPLFYACDYHTQIKPLPGFAQ
AGNDYEEITIGEHMYGQALQTYQYLRQRVANGEVQLPGKARKPASFGHLKNQAQPS