Protein Info for PfGW456L13_2276 in Pseudomonas fluorescens GW456-L13

Annotation: Transcription regulator [contains diacylglycerol kinase catalytic domain]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 TIGR03702: lipid kinase YegS" amino acids 5 to 295 (291 residues), 434.8 bits, see alignment E=1.3e-134 PF00781: DAGK_cat" amino acids 6 to 125 (120 residues), 86 bits, see alignment E=1.6e-28 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family" amino acids 7 to 289 (283 residues), 192.4 bits, see alignment E=8.5e-61 PF19279: YegS_C" amino acids 154 to 286 (133 residues), 47.6 bits, see alignment E=1.6e-16

Best Hits

Swiss-Prot: 81% identical to YEGS_PSEPF: Probable lipid kinase YegS-like (Pfl01_3958) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K07029, (no description) (inferred from 81% identity to pfo:Pfl01_3958)

Predicted SEED Role

"Transcription regulator [contains diacylglycerol kinase catalytic domain]"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QMD1 at UniProt or InterPro

Protein Sequence (305 amino acids)

>PfGW456L13_2276 Transcription regulator [contains diacylglycerol kinase catalytic domain] (Pseudomonas fluorescens GW456-L13)
MSDRKALLILHGKQALNEAVRTAVESQRERGRELAVRLTWEAGDAQRLVGEALAAGYRYI
IAGGGDGTLRDIAEAMAQHSIKASLVLMPLGTANDFARAAGVSLEPDQALELLDSVPTAI
DLGEVDGQIFLNMATGGFGSHVTANTPEDLKKILGGAAYLFTGLSRFNELHTAYGELQGS
DFHWRGDLLALGIGNGRQAGGGRELCPQALVDDGLLDISILPAPQEVVSTLKNLLTEGFG
IDSMFVRARLPWVEIKVSEGLYINLDGEPLEGDSLRFSVRPAALLVHLPENSPLLRDSEV
PSHRG