Protein Info for PfGW456L13_2214 in Pseudomonas fluorescens GW456-L13

Annotation: Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 117 to 134 (18 residues), see Phobius details PF07681: DoxX" amino acids 16 to 103 (88 residues), 86.4 bits, see alignment E=8.6e-29

Best Hits

Swiss-Prot: 42% identical to MHQP_BACSU: Putative oxidoreductase MhqP (mhqP) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 91% identity to pfo:Pfl01_4019)

Predicted SEED Role

"Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QP91 at UniProt or InterPro

Protein Sequence (144 amino acids)

>PfGW456L13_2214 Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD (Pseudomonas fluorescens GW456-L13)
MSTLINKVLSTRAGYGLTVLRIVVGIVFAAHGSQKLFGAFGGYGLAGTAQYMESLGLTPG
YLMAALAGGTEFFAGLALIIGLLVRPAALGLIFLSLVAIFSVHISNGLFMANNGYEFALA
LLGGSIAVLIEGAGKLSADRAIAG