Protein Info for PfGW456L13_2167 in Pseudomonas fluorescens GW456-L13

Annotation: Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 PF03070: TENA_THI-4" amino acids 33 to 242 (210 residues), 36.1 bits, see alignment E=5.9e-13 PF14518: Haem_oxygenas_2" amino acids 55 to 218 (164 residues), 42.2 bits, see alignment E=7.7e-15

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfo:Pfl01_4085)

Predicted SEED Role

"Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293PZ80 at UniProt or InterPro

Protein Sequence (264 amino acids)

>PfGW456L13_2167 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C (Pseudomonas fluorescens GW456-L13)
VIDTFNRTGPLMEAASYPAWAQRLIQDCSESKRRVVEHELYQRMRDNKLSAKTMRQYLIG
GWPVVEQFALYMAQNLTKTRFARHPGEDMARRWLMRNIRVELNHADYWVNWSRAHGVSLE
ELQAQQVPPELHALSHWCWHTSSADSLIVAIAATNYAIEGATGEWSAVVCSNGIYAASFP
EEDRKRAMKWLKMHAQYDDAHPWEALEIICTLAGTNPGKSLQVELRQAVCKSYDYMYLFL
ERCMQMEHAEWVPVVRERMALAEG