Protein Info for PfGW456L13_2112 in Pseudomonas fluorescens GW456-L13

Annotation: Putative deoxyribonuclease YcfH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 TIGR00010: hydrolase, TatD family" amino acids 2 to 254 (253 residues), 282.4 bits, see alignment E=1.5e-88 PF01026: TatD_DNase" amino acids 3 to 254 (252 residues), 284 bits, see alignment E=5.1e-89

Best Hits

Swiss-Prot: 37% identical to YABD_BACSU: Uncharacterized metal-dependent hydrolase YabD (yabD) from Bacillus subtilis (strain 168)

KEGG orthology group: K03424, TatD DNase family protein [EC: 3.1.21.-] (inferred from 95% identity to pfo:Pfl01_4149)

Predicted SEED Role

"Putative deoxyribonuclease YcfH" in subsystem YcfH

Isozymes

Compare fitness of predicted isozymes for: 3.1.21.-

Use Curated BLAST to search for 3.1.21.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QNP8 at UniProt or InterPro

Protein Sequence (261 amino acids)

>PfGW456L13_2112 Putative deoxyribonuclease YcfH (Pseudomonas fluorescens GW456-L13)
MLVDSHCHLDRLDLTAHEGSLDAALEAARQRGVGHFLCIGVSADNAADVKALAERYDDVD
CSVGVHPLDVQPGAAPALDWLLQELNHPRVVAIGETGLDYHYEPEAAELQQESFRLHLQA
AQQTGKPVIIHTRGARTDTLDLLRDAALPQAGVLHCFTEDWEMAKAALDMGYYISLSGIV
TFRNADALRDVASKVPADRLLVETDSPYLAPIPYRGKPNLPQYVREVAEFLSMLRGEPYE
RFAEQTTANFKRLFPLAHVKG