Protein Info for PfGW456L13_200 in Pseudomonas fluorescens GW456-L13

Annotation: Glycosyl transferase in large core OS assembly cluster

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 PF13579: Glyco_trans_4_4" amino acids 25 to 156 (132 residues), 34.1 bits, see alignment E=7e-12 PF13439: Glyco_transf_4" amino acids 26 to 178 (153 residues), 49.1 bits, see alignment E=1.4e-16 PF00534: Glycos_transf_1" amino acids 187 to 339 (153 residues), 90.1 bits, see alignment E=2.6e-29 PF13692: Glyco_trans_1_4" amino acids 202 to 335 (134 residues), 86.1 bits, see alignment E=5.6e-28

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_0477)

Predicted SEED Role

"Glycosyl transferase in large core OS assembly cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QG29 at UniProt or InterPro

Protein Sequence (384 amino acids)

>PfGW456L13_200 Glycosyl transferase in large core OS assembly cluster (Pseudomonas fluorescens GW456-L13)
MSQRSKVLQLQPDYNVKAHDFADLAEQIVKALPGDRYEVTAAFLRGKPGPGEAVSRADRS
VYFEFSDKSLKGMRLRAMWQLYKFCRREKFDVVICNRFKPVNMMLALNRWLKVPLCIGIS
HGFGEYDRFYRRRQTQRLIDRHWRFVGVSPAVKQYLLDCDCGFTDQNTYAITNAIDIEQA
EGLQHSREKAREMLGIDPSVRLIGALGRLVPVKGHIYLLQAFAALKDKYPNTQLAIIGAG
REESRLAAEIDRLGLSGRAHLLGFKEIALQYIRAFDIWTMPSLAEGLGLALLEGMSGHLP
VIASNVPAMLPLIEGAGGLAITPKDVPTLQAALDTYLGLSDDELKAKGEQSFRYLQQHHD
IEEFRREYLNLIDSGLEQARKEQP