Protein Info for PfGW456L13_1969 in Pseudomonas fluorescens GW456-L13

Annotation: FIG00963434: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1675 transmembrane" amino acids 442 to 467 (26 residues), see Phobius details PF20178: DUF6543" amino acids 81 to 344 (264 residues), 152.2 bits, see alignment E=3.1e-48

Best Hits

Predicted SEED Role

"FIG00963434: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QNB4 at UniProt or InterPro

Protein Sequence (1675 amino acids)

>PfGW456L13_1969 FIG00963434: hypothetical protein (Pseudomonas fluorescens GW456-L13)
MNTQHTDIASDAFRPDAHYQHLSNVIPSWLRQATPQRREALRNSAPGIPAGLKDAPPHQH
AELGKLIARHVTSQNQVDQMMAKLQSPADFAEPLLETALKTRFGLELDARKTFLRLYIPA
HIPWLRLKSGAARTWTVSLLDAALHNFESTETKADAFEPASTYITPPSATGQFNTLPQIL
EKMPITAFTSLCRELDIGQRYKEYLDDNLGISNPVAAAILKSKIHDSQKTALTAALHMAQ
MQKLLGSDVHRLTLGLLDNLPSLRLHGLPWGYHELTIMNARLTGIVLFAPDLERATEVVR
VVAYIPDDPEHPIKEYSSTAAFAEELGQRLRAPEYQQFFSRFINHEDRGHFFAQLNNELS
PLTWQPVPPGDPHPTWRERPNQRPDLHIAATPVKDDLLTHLYQSKLNKILNDARVIAVST
ATVDQRARWALWDSFTEIASTLLNIAAFIALPFVPFLGELMLAYMAYQLLDETFESIVDW
AEGHTTEAFEHFMGVVESAVQLGTFAVGGVIAAGEFRAILPKEIVQFIDRFNSVKRPNGE
TRYWKPDLTAYEHPATLPADSKPDSLGLHRHQGKTLLPLEGKNYAVSEDFVIGEYRIDHP
SRPDAYKPQLRHNGTGAWQTELDQPLSWDQATVLHRIGPDMQRFSASTRERILSISGSHE
DTLRKIHVHAGQVPPLLADTLKRFRIDQDIQTFIDQIGSDQPEHFLKADPVTQLELLNEN
GYWPANKGLRLIDENAQTLWQSPAPDVPVVEIDATRLTDGDLLKTFLLTLSDSEARTLMG
EEFGHPSPGLENRAQRLRKILARLAEQKRQGLFDQRYRRLERGAQGPIQAVMDAEPGLPS
SVAEAIVNTANEQELQQLKKPTISPRLVELSQEARLQVRVTRAYEGLDLPSTENNLDTDR
LALHTLEKLPGWTGQLRLEVRQYAHEGLLIDSVGSADAPLRKVLVLRVEGEYQAFDQDGE
ELSGMDSLYACLLQAMPDSERTALNLHIGEGERLKQLIRNHALSRDALSSLLARHPNLKP
TYDPKVMRLLGGGDGYRQMPRNTPTLQARAQTLFPHLSAEELDAFVERLQQHPNGPRAEL
NRLMVQHTQLQETLSSWRDEIPLFIPDTQLRVTPEQFAAQKQVRRQFTIDLMDCWRQQWT
LPETALERVDFNFFQPIIGELPALSTDFSGVTMLTLEGSSATRGMHEFLRSFTGLRILKL
RDFNLGRLPDTLPSLQLEELILSNCAITLSPESQVGLAGLHRLTTMDLYKNPLGLTPDVG
SMPDLNYIDLSQTGITELPRELLTRPRLRTALLNNNQIKELPSALFTLQQRTQEGFDLGN
NPLSNAARERLKQHFQQTRQDFGIFAEETDIHRAQALYPWMDQEDASKFVYKLPGTLDEG
RVELTRLEVELTTLENDLSAWTGNIPAVHPHSNQPFTAQQLLIEHSTRDAFRESVLRCWR
RESDPEDFDVSLQATTYDLSLETRITGNLPTLSADFSHVSLVYLSSESGLTTGVTGFLEC
FPKLKTLVINDFRLGDIPEAIFRMSDLRSLNLLDCNITLTPQSALNLAEMARLEFIDLRN
NPLGLAPDISQMADLATLQLDNCGLTELPAGLLQLKSLETVDLSDNAISRIPADLLELPL
EVAESINLRGNPFSEDSLQILIEYFRLTSVDFGVQEVIDRAELEVSTSEASEPED