Protein Info for PfGW456L13_1913 in Pseudomonas fluorescens GW456-L13

Annotation: Ribonuclease BN (EC 3.1.-.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 transmembrane" amino acids 35 to 58 (24 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 177 to 202 (26 residues), see Phobius details amino acids 211 to 234 (24 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 19 to 275 (257 residues), 134.5 bits, see alignment E=3e-43 PF03631: Virul_fac_BrkB" amino acids 24 to 277 (254 residues), 233.7 bits, see alignment E=1.5e-73

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 91% identity to pfo:Pfl01_4350)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QIJ9 at UniProt or InterPro

Protein Sequence (319 amino acids)

>PfGW456L13_1913 Ribonuclease BN (EC 3.1.-.-) (Pseudomonas fluorescens GW456-L13)
MIFPDMRGLPLHRVMMRTVTEFIADEMSTYASALAYQMLFSLFPFILFLIALIGFLHLPD
FFSWLRLQSELVLPPQALEQVNPVIDQLQQSKGGLLSVGIVIALYTASAGVRLMMSAMNA
AYDVVEGRPLWKRFPLSIIYTVGIAGMLLIAAALMVLGPQVMSWIAAQVGLEYFIVTLWT
IARWPVIVILLMVAVALIYYVMPDVKQEFRFITPGSVLAVVVWIIASLGFGLYVKEFANY
NAMYGSIGAIIVLLLYFYISAAVLLLGAEMNAVIEHMSREGKDPGEKVAGEHGPVHEEKH
HVSGLGRDHSQPKPTIDET