Protein Info for PfGW456L13_1896 in Pseudomonas fluorescens GW456-L13

Updated annotation (from data): ABC transporter for D-Galactose and D-Glucose, permease component 2
Rationale: Specific phenotypes on D-Galactose; N L-Lysine. glucose is the C source for the N source experiments with a phenotype (i.e. lysine); may also transport fructose.
Original annotation: Glucose ABC transport system, inner membrane component 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 183 to 207 (25 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 92 to 265 (174 residues), 53.5 bits, see alignment E=1.3e-18

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 95% identity to pfl:PFL_4615)

Predicted SEED Role

"Glucose ABC transport system, inner membrane component 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QN38 at UniProt or InterPro

Protein Sequence (281 amino acids)

>PfGW456L13_1896 ABC transporter for D-Galactose and D-Glucose, permease component 2 (Pseudomonas fluorescens GW456-L13)
MTNQLGKSGISFSRIAIYATLLLAAAVYLIPLVVMLLTSFKSPEDIRTGNLLSWPTVIDG
IGWIKAWDVVGGYFWNSVKITVPAVLISTFIGAMNGYVLSMWRFRGSQLFFGLLLFGCFL
PFQTVLLPASFTLGKFGLANTTTGLVLVHVVYGLAFTTLFFRNYYVSIPDALVKAARLDG
AGFFTIFLKILLPMSIPIVMVCLIWQFTQIWNDFLFGVVFASGDAQPITVALNNLVNTST
GAKEYNVDMAAAMIAGLPTLLVYIFAGKYFLRGLTSGAVKG