Protein Info for PfGW456L13_1870 in Pseudomonas fluorescens GW456-L13

Annotation: Sigma-54 dependent transcriptional regulator/sensory box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 PF00158: Sigma54_activat" amino acids 194 to 360 (167 residues), 224 bits, see alignment E=3.3e-70 PF14532: Sigma54_activ_2" amino acids 194 to 365 (172 residues), 71.7 bits, see alignment E=2.6e-23 PF07728: AAA_5" amino acids 216 to 330 (115 residues), 25.5 bits, see alignment E=4e-09 TIGR04381: TyrR family helix-turn-helix domain" amino acids 452 to 499 (48 residues), 87.2 bits, see alignment 2.8e-29 PF18024: HTH_50" amino acids 452 to 498 (47 residues), 50.4 bits, see alignment 5.2e-17

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfl:PFL_4639)

Predicted SEED Role

"Sigma-54 dependent transcriptional regulator/sensory box protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QKR4 at UniProt or InterPro

Protein Sequence (502 amino acids)

>PfGW456L13_1870 Sigma-54 dependent transcriptional regulator/sensory box protein (Pseudomonas fluorescens GW456-L13)
MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVPPNVYIDAPTLSPQVLEELRDALFSV
RGVQAVTVVDILPGQRRHLQLDALLAAMTDPVLALDSDGKVLLANPALIALYGREPDGES
VADLFADPALLDTLLEHGFRLPLREITVNGQTLLLDATPITDAGALLTLYQPNRIGERLS
ALHHDHAEGFDALLGESPVIRTLKARAQRVAALDAPLLIQGETGTGKELVARACHAISAR
HSAPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSP
YLQAKLLRFLNDGSFRRVGGDREVKVNVRILSATHRDLEKMVSEGLFREDLFYRLNVLNV
EVPPLRERGQDILLLARYFMQQACAQIQRPVCRLAPGTYPALLGNRWPGNVRQLQNVIFR
AAAICESSLVDIGDLDIAGTSVARQGDHDVDSLEQAMDEFEKTLLEKLYASYPSTRQLAT
RLQTSHTAIAHRLRKYGIPSKA