Protein Info for PfGW456L13_1780 in Pseudomonas fluorescens GW456-L13

Annotation: Transporter, LysE family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 62 (24 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 146 to 169 (24 residues), see Phobius details amino acids 180 to 198 (19 residues), see Phobius details PF01810: LysE" amino acids 15 to 197 (183 residues), 152.6 bits, see alignment E=4.6e-49

Best Hits

Swiss-Prot: 45% identical to YGGA_AERSA: Putative amino-acid transporter YggA (yggA) from Aeromonas salmonicida

KEGG orthology group: K06895, L-lysine exporter family protein LysE/ArgO (inferred from 94% identity to pfl:PFL_4825)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QN36 at UniProt or InterPro

Protein Sequence (200 amino acids)

>PfGW456L13_1780 Transporter, LysE family (Pseudomonas fluorescens GW456-L13)
MWQSYVNGLLVAFGLIMAIGTQNAFVLAQSLRREHHLPVAALCVTCDALLVAAGVFGLAT
VLAQNPTLLAIARWGGAAFLLWYGSQALRRAFSKQSLEQGEGQTVRSLRAVMLSALAVTL
LNPHVYLDTVLLIGSLGAQQTEPGAYVVGAASASLLWFFTLALGAAWLAPWLARPGTWRI
LDLLVAVMMFAVALQLIAAI