Protein Info for PfGW456L13_1775 in Pseudomonas fluorescens GW456-L13

Annotation: Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06537: DHOR" amino acids 33 to 475 (443 residues), 385.7 bits, see alignment E=3.6e-119 PF00034: Cytochrom_C" amino acids 347 to 475 (129 residues), 27.4 bits, see alignment E=7.4e-10

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfo:Pfl01_4489)

Predicted SEED Role

"Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QN96 at UniProt or InterPro

Protein Sequence (475 amino acids)

>PfGW456L13_1775 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites (Pseudomonas fluorescens GW456-L13)
MPSLPLRLSALFLALGLSACDDAPKFTRAEPGEARSGGSATVRKTDQNAFSMPSANLPPS
RRVDFSVGNSFFRSPWVIAPSTTTARDGLGPLFNTNACQGCHIKDGRGHPPTPDDVNAVS
MLVRLSIPDAPAYAKVIEQLGVVPEPVYGGQFQDMSVPGVAPEGKVRVDYTPVPVRFKDG
TEVELRKPSLNITQLGYGPMHPDTRFSGRVAPPMIGLGLLEAIPEEAILANAEAQAKANN
GINGRPNRVWDDALQKTVLGRFGWKAGQPNLNQQNVHAFSGDMGLTTSLRPLDDCTDAQT
ACKQAPSGNGPDGEPEVSDNILRLVLFYSRNLAVPARRDVNAPEVLAGKTLFYQAGCQSC
HTSKYTTAANAAEPELANQVIRPYSDLLLHDMGDGLADNRSEFQASGRQWRTPPLWGIGL
TQAVSGHTQFLHDGRARNLLEAVLWHGGEATAAQQQVLSFNAEQRAALLAFLNSL