Protein Info for PfGW456L13_1720 in Pseudomonas fluorescens GW456-L13

Annotation: Sodium/hydrogen exchanger family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 603 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 49 (19 residues), see Phobius details amino acids 55 to 77 (23 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 187 to 208 (22 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details amino acids 244 to 262 (19 residues), see Phobius details amino acids 273 to 290 (18 residues), see Phobius details amino acids 296 to 313 (18 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details amino acids 363 to 384 (22 residues), see Phobius details PF00999: Na_H_Exchanger" amino acids 14 to 390 (377 residues), 130.7 bits, see alignment E=6.3e-42 PF02254: TrkA_N" amino acids 403 to 499 (97 residues), 24.4 bits, see alignment E=3.1e-09

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfo:Pfl01_1024)

Predicted SEED Role

"Sodium/hydrogen exchanger family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QLT3 at UniProt or InterPro

Protein Sequence (603 amino acids)

>PfGW456L13_1720 Sodium/hydrogen exchanger family protein (Pseudomonas fluorescens GW456-L13)
MSEQQILLAFGGIGAAALLCQWLAWRLKLPAILFLLLTGILAGPVLHLLDPQEMFGPLLM
PLVSLAVALILFEGSLTLHLSEWREIGSVVHRLVTIGALSTWVVIAVATHWLLGFDWLLA
ILFGSLTLVTGPTVIVPMLRVVRPKASIANILRWEGIVIDPIGALLAVVVYSFIIASAEG
NGLKESLLTFGGVILCGSLFGIFGGWLLGTLIRRQWLPEYLHNLAALAAVLGIFIASNEV
THESGLLAVTLMGMWLANMKGVDVRHILHFKENLSVLLISGLFILLAARLDLNAMIGLGP
LVLILLLVIQFIARPLNVLLSTAGSSLGWRERALLAWIAPRGIVAAAVSAIFAIRLHEAG
HQGALLLVPLTFAVIIGTVVLQSATARPLARLLKVAEPAPSGFLIIGANGPARTLGKALQ
QLGSRVLLTDSSWENIRAARMEGLPTYFGNPASQHADAHLDLVGLGHLLALSPSGELNTL
AAMRFRHDFGHQRLFGLASGQESRRTDKHRASHEHRGRLLGNEELTYIKLANQLHQGGEL
YSTNLTEGFGWEDYQALHGERATLLFARDDSGWVHVVTPDSAVKPSAGWTLLALIQPETS
DAT