Protein Info for PfGW456L13_1693 in Pseudomonas fluorescens GW456-L13

Annotation: YheO-like PAS domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 PF08348: PAS_6" amino acids 15 to 120 (106 residues), 90.3 bits, see alignment E=8.1e-30 PF13309: HTH_22" amino acids 148 to 209 (62 residues), 64.2 bits, see alignment E=9.2e-22

Best Hits

Swiss-Prot: 87% identical to DAUR_PSEAE: Transcriptional regulator DauR (dauR) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_0968)

Predicted SEED Role

"YheO-like PAS domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QMC0 at UniProt or InterPro

Protein Sequence (213 amino acids)

>PfGW456L13_1693 YheO-like PAS domain (Pseudomonas fluorescens GW456-L13)
MNAPEKDSALDDTSLDNFHAIADAIATLFFPHAEVVLHDLRTQKVDYIANNLSKREIGDD
SALEDMLSDDVSERNIGPYEKLNWDGQKIRSLSTVLRDSESRPLAVLCINLNISLFENAK
AALDLFLSPTKLIPQPDALFRDDWQERINTFLHAWLRERQLSLNLLTRDHKRELVLALHA
EGAFKGKSASNYVANVLNMGRATVYKHLKELKG