Protein Info for PfGW456L13_169 in Pseudomonas fluorescens GW456-L13

Annotation: Predicted signal transduction protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 PF08668: HDOD" amino acids 27 to 207 (181 residues), 40.8 bits, see alignment E=9e-15

Best Hits

KEGG orthology group: None (inferred from 85% identity to pfo:Pfl01_0511)

Predicted SEED Role

"Predicted signal transduction protein" in subsystem Flagellar motility

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QIU8 at UniProt or InterPro

Protein Sequence (512 amino acids)

>PfGW456L13_169 Predicted signal transduction protein (Pseudomonas fluorescens GW456-L13)
MVNETNVPTPKPTTLEGWVKLLDGVRLPVPQASHDRVCKAIRDNRSSLRDIADLMQGSPA
LALSVIREANRHTHGSMTEPAENLEIAINRLGLKRTDELLARLPAEPELEIPKALRQLQM
ISQHATQQANGFFASRLARLWQDIHWGSLLFLSPLWPLALTHPKLLEDWELRVIHKGESA
RKVEQQLFGVRLLDIGQALVEVWRLPIWVQQGYRLLLTEQRELVKVLRIARDSDHPLRQQ
NRLDDDPTLRRWLNQPANTVLLANGLALSAQHAWDSPHSERWQYLTSLYLQMPMDELQQQ
LHQQAANSARQHAMPDLWHPAESLIWPWGMNRVHAGLLPAAAPTAEDLAKWRKQCAELLV
EPSRFTNAMHLTIAARDALVACGMRRVMILMADRTHANLRVHQTAGLSKEVAGLNFVVSQ
SNVLQRLLAQQAQVRLTPANNAQFSAMLPNSLRSQFSGEHLLLRSLINNGRVIMIVVADQ
GGGPFSEISVQAFGKTAQCIEKALHSFSHRGQ