Protein Info for PfGW456L13_168 in Pseudomonas fluorescens GW456-L13

Annotation: Flagellar motor rotation protein MotA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 48 (18 residues), see Phobius details amino acids 69 to 85 (17 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 198 to 220 (23 residues), see Phobius details TIGR03818: flagellar motor stator protein MotA" amino acids 1 to 281 (281 residues), 367.6 bits, see alignment E=1.8e-114 PF20560: MotA_N" amino acids 4 to 92 (89 residues), 97.9 bits, see alignment E=3.3e-32 PF01618: MotA_ExbB" amino acids 134 to 239 (106 residues), 41.5 bits, see alignment E=1.1e-14

Best Hits

KEGG orthology group: K02556, chemotaxis protein MotA (inferred from 99% identity to pfo:Pfl01_0512)

Predicted SEED Role

"Flagellar motor rotation protein MotA" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QFZ3 at UniProt or InterPro

Protein Sequence (283 amino acids)

>PfGW456L13_168 Flagellar motor rotation protein MotA (Pseudomonas fluorescens GW456-L13)
MAKIIGIIVVFASVLGGYVLSHGKIAALIQPFEVMIIGGAALGAFLQANPGYMTMHVLKK
SLSMFSSRFNHAFYLEVLGLIYEILNKSRREGMMAIEGDIEDAAASPIFAKYPTVLKDER
MTAFICDYLRIMSSGNMAPHELEGLFDMELFSLKEDLEHPSHAVNGIADAMPGFGIVAAV
LGIVVTMASLGEGDQKSIGLHVGAALVGTFFGILAAYGFFGPLAHSLAHDAKEELNVYEA
IKASLVASASGMPPSLAVEFGRKVLYPAHRPSFAELEQAVRGR