Protein Info for PfGW456L13_1641 in Pseudomonas fluorescens GW456-L13

Annotation: Predicted endonuclease distantly related to archaeal Holliday junction resolvase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 TIGR00252: TIGR00252 family protein" amino acids 7 to 119 (113 residues), 112 bits, see alignment E=8.9e-37 PF02021: UPF0102" amino acids 13 to 104 (92 residues), 95.8 bits, see alignment E=1.6e-31

Best Hits

Swiss-Prot: 92% identical to Y4685_PSEPF: UPF0102 protein Pfl01_4685 (Pfl01_4685) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K07460, putative endonuclease (inferred from 92% identity to pfo:Pfl01_4685)

Predicted SEED Role

"Predicted endonuclease distantly related to archaeal Holliday junction resolvase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QMW2 at UniProt or InterPro

Protein Sequence (120 amino acids)

>PfGW456L13_1641 Predicted endonuclease distantly related to archaeal Holliday junction resolvase (Pseudomonas fluorescens GW456-L13)
MPDRSRQQSGKDAERHALEHLQQQGLRLLAQNWLCKRGELDLVMLDGDTVVFVEVRYRKN
TQWGDALDSIDERKRQKLIFAAQYYLQREPRWANSPCRFDVIAIDSHLDQLNWLQNAFDG