Protein Info for PfGW456L13_1626 in Pseudomonas fluorescens GW456-L13

Annotation: Alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 transmembrane" amino acids 102 to 121 (20 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 53 to 136 (84 residues), 32.8 bits, see alignment E=1.2e-11 PF02129: Peptidase_S15" amino acids 54 to 116 (63 residues), 24.5 bits, see alignment E=4.2e-09 PF12146: Hydrolase_4" amino acids 56 to 138 (83 residues), 36.1 bits, see alignment E=8.7e-13 PF00975: Thioesterase" amino acids 86 to 140 (55 residues), 38 bits, see alignment E=4.3e-13

Best Hits

KEGG orthology group: K07018, (no description) (inferred from 89% identity to pba:PSEBR_a4647)

Predicted SEED Role

"Alpha/beta hydrolase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QMP6 at UniProt or InterPro

Protein Sequence (209 amino acids)

>PfGW456L13_1626 Alpha/beta hydrolase (Pseudomonas fluorescens GW456-L13)
MRETPVVIDGPVGQLEALYLDNEQARGLALICHPNPVQGGTMLNKVVSTLQRTARDAGLI
TLRFNYRGVGASEGTHDMGTGEVDDAQAVAEWFRARHPQLPLTLFGFSFGGFVAASLGGR
LEAKGEPLKHLFMVAPAVMRLSAQDSLPQQGELTLIQPETDEVIDPQLVYQWSDTLERPH
ELLKVAECGHFFHGKLTDLKDLILPRLSN