Protein Info for PfGW456L13_1624 in Pseudomonas fluorescens GW456-L13

Annotation: Outer membrane protein assembly factor YaeT precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 45 to 63 (19 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details PF00691: OmpA" amino acids 123 to 218 (96 residues), 78.1 bits, see alignment E=2.7e-26

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_4703)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QHP1 at UniProt or InterPro

Protein Sequence (244 amino acids)

>PfGW456L13_1624 Outer membrane protein assembly factor YaeT precursor (Pseudomonas fluorescens GW456-L13)
MFTMRRLMIVATAVAVLSGCASPNPYDGQPQGQADGSSQGMSKTAKYGGLGALAGALAGA
AINHDNRGKGALIGAAVVGASAAGYGYYADQQEKKLRASMANTGVEVQRQGDQIKLIMPG
NITFATDSANIAPSFYQPLNNLAGSLKEFNQNQIEIVGYTDSTGSRQHNMDLSQRRAQSV
ATYLTSQGVSGANLSARGAGPDSPVASNGDANGRAQNRRVEVNLKAIPGQQYGGQQQGQV
QQYP