Protein Info for PfGW456L13_1613 in Pseudomonas fluorescens GW456-L13

Annotation: Methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 713 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 360 to 381 (22 residues), see Phobius details PF00672: HAMP" amino acids 380 to 433 (54 residues), 44.9 bits, see alignment 1.2e-15 PF00015: MCPsignal" amino acids 499 to 679 (181 residues), 152.2 bits, see alignment E=1.3e-48

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 94% identity to pfo:Pfl01_4715)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QKJ2 at UniProt or InterPro

Protein Sequence (713 amino acids)

>PfGW456L13_1613 Methyl-accepting chemotaxis protein (Pseudomonas fluorescens GW456-L13)
MKFKSIQFSVAALAGAIVLSVVAALVVYALFSGARTQDMVQERTQAQFEQVIEQRLTSLA
QTQVSQIQRELEAPLLIAGGLVRVNALIGTPGTDGQPSLSLSREQLIGLIKENVVKNPKI
LGTYIGWEKDALDHNDAAYVGTQVVGIDASNGRFLPWWFRNDDGTLGLDKLVDVDDQKTL
STGVRASEYYLCSKETKKSCVIDPAPYKVGDKIVMLASFIEPIMLNGAFQGIVGADLSVN
FIQEMLLGANQKLYSGAGEMALIGGNGRIVAYTKDPSKFGEKVSDILDSKQIANMANLKR
GEVTYTVDKAQGRIELYLPFGIGQTDARWTLMLQLPLNAVMADLQKLQADLDAQRKSDTF
GMAMVGLVIAGIGLLVIWLVGHGIARPLKQMVAMLDDIAQGEGDLTRRLTSDRADELGSI
AKGFNTFLAKLQAMITQVVTSVQSVSDSSEHTADIAIRTNTGVHKQMAEIDQVATAVQEM
TATAQDVARNATQAAQAASHADQAASQGMQIVRDTSNSIGALAVEIGRAVGVVQTLAKDS
ENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQKATEEIQ
TMIQQLQQGTRDVVRVMEDSQNRTDESVLHASKAAEALETITQAVSVINDMNTQIASAAE
EQSAVADDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLINQFRV