Protein Info for PfGW456L13_1586 in Pseudomonas fluorescens GW456-L13
Annotation: Lipid A 3-O-deacylase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 65% identical to PAGL_PSEAE: Lipid A deacylase PagL (pagL) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
KEGG orthology group: None (inferred from 84% identity to pba:PSEBR_a4754)Predicted SEED Role
"Lipid A 3-O-deacylase" in subsystem Lipid A modifications
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A293QJW8 at UniProt or InterPro
Protein Sequence (147 amino acids)
>PfGW456L13_1586 Lipid A 3-O-deacylase (Pseudomonas fluorescens GW456-L13) VEFAVGQTGESTMTYRLGMQFDWDQSWWQSDVGRLTGYWDGAYTYWEGDEKSSNHSLSFS PVLVYEFAGQNVKPYIEFGIGVAAFASTEVESNDLGSAFQFEDRFGFGLRFAGGHEVGVR ATHYSNAGITTPNDGVESYALHYTMPL