Protein Info for PfGW456L13_1566 in Pseudomonas fluorescens GW456-L13

Annotation: ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF01547: SBP_bac_1" amino acids 39 to 287 (249 residues), 75.9 bits, see alignment E=1.2e-24 PF13531: SBP_bac_11" amino acids 42 to 289 (248 residues), 42.1 bits, see alignment E=1.8e-14 PF13416: SBP_bac_8" amino acids 43 to 316 (274 residues), 107.5 bits, see alignment E=2.2e-34 PF13343: SBP_bac_6" amino acids 83 to 301 (219 residues), 61.2 bits, see alignment E=2.2e-20

Best Hits

KEGG orthology group: K02055, putative spermidine/putrescine transport system substrate-binding protein (inferred from 91% identity to pfl:PFL_5177)

Predicted SEED Role

"ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QLZ3 at UniProt or InterPro

Protein Sequence (348 amino acids)

>PfGW456L13_1566 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) (Pseudomonas fluorescens GW456-L13)
MSKWIKSIGTSLFLTLPLTMVGSVQAAEKLNVVSWSGYFSPEILAKFQKQTGIEVTVDSY
DSNETLLAKLKQGGAGYDVAIPSHQFVPILIKEKLLERFDPVNEPYYASVVDNLKKPTWD
PEGAYSVPFIWGTTSVVLNTERYKGPADSLKVLYEPPAELQGRINMFDSVSDVVDMASLY
LNIPLCSEDPKQMQQILTLLKAQKPFVKTYSSKAGSIRENLASGEIDMSTFWGGSSMRAR
EMKPSLKYLYPKEGVLAWVDNMVIPTGSKNPANAKAFIAFLSQPENAAMTQNFLKHQSPI
KGVEPFLDAGLKDAPELHIPEGTQVVFSKTCGEGAIRLADRLWTNLMR