Protein Info for PfGW456L13_135 in Pseudomonas fluorescens GW456-L13

Annotation: Protein containing domains DUF404, DUF407, DUF403

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 828 transmembrane" amino acids 635 to 651 (17 residues), see Phobius details amino acids 672 to 689 (18 residues), see Phobius details amino acids 709 to 726 (18 residues), see Phobius details PF14403: CP_ATPgrasp_2" amino acids 81 to 459 (379 residues), 526 bits, see alignment E=7.8e-162 PF04174: CP_ATPgrasp_1" amino acids 81 to 412 (332 residues), 375.4 bits, see alignment E=3.3e-116 PF04168: Alpha-E" amino acids 509 to 815 (307 residues), 220.6 bits, see alignment E=5.8e-69

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfo:Pfl01_0542)

Predicted SEED Role

"Protein containing domains DUF404, DUF407, DUF403"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293PWD7 at UniProt or InterPro

Protein Sequence (828 amino acids)

>PfGW456L13_135 Protein containing domains DUF404, DUF407, DUF403 (Pseudomonas fluorescens GW456-L13)
MPDLLDRYPLTAGTYHELLDDSGAVRPHWRRLFEQLQRSTPAQLVQRQALLTRQIQENGV
TYNVYADPKGADRPWELDLLPHVIAADEWQQLSAGIAQRARLLNAVLADLYGPQRLIAEG
LLPAELVFGHNNFLWPCQGISPPDGAFLHLYAVDLARTPDGRWWVTADRTQAPSGAGYAL
ENRTIVSRAFPELYRDLKVQHLAGFFRTLQETLVRQAPSDGDAPLVVLLTPGRFNESYFE
HLYLARQLGYPLVEGGDLTVRDATVYLKTLSGLRRVHAIMRRLDDDFCDPLELRTDSALG
VPGLLEAVRQGRVLVANALGSGVLESPGLLGFLPKINQFLFGEELILPSIATWWCGEAPV
LAQALEKLPELLIKPAFPSQSFAPVFGRDLSEKQRKELAERMQARPYAYVAQELAQLSQA
PIWQAEDGQLQPRAIGMRVYAVASREGYRVLPGGLTRVAAQADAEVVSMQRGGASKDTWV
LGDRAPSGEQWKAQRNIGVHDLVRRDPYLPSRVVENLFWFGRYCERCDDSARLLRIMLAR
YVDGDDPQALQAAVDLGERLMLLPEEGELPERLLAALLGDDWPFSLRSNLQRLQWAASQV
RGKLSRENWQALVELQREAMELETEEPDFGELLDFLNRLVMSLAALSGFALDDMTRDEGW
RFLMIGRRIERLQFLSGSLAAFLRGAGAFDQAGLEWLLELGNSSITYRSRYLAVAQLIPV
LDLLLLDEQNPHAVLFQLKLVTRTLKRLNDDFGVPREAALPQLVERLARFDLGCLENPLF
GDASVRAAIEGLAALLQEIADASGQVSDRLALRHFAHVDDVSQRTVSV