Protein Info for PfGW456L13_1299 in Pseudomonas fluorescens GW456-L13

Annotation: Lhr-like helicases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1435 PF00270: DEAD" amino acids 30 to 216 (187 residues), 98.6 bits, see alignment E=8.3e-32 PF04851: ResIII" amino acids 41 to 215 (175 residues), 34.3 bits, see alignment E=5.5e-12 PF00271: Helicase_C" amino acids 273 to 371 (99 residues), 63.4 bits, see alignment 5.5e-21 PF08494: DEAD_assoc" amino acids 636 to 838 (203 residues), 163.9 bits, see alignment E=1e-51

Best Hits

Predicted SEED Role

"Lhr-like helicases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QLY4 at UniProt or InterPro

Protein Sequence (1435 amino acids)

>PfGW456L13_1299 Lhr-like helicases (Pseudomonas fluorescens GW456-L13)
MNLPIPADSALSGFHPAVSAWFSHTFPAVTAAQARAWPLIRQRRSTLVAAPTGSGKTLTA
FLAVIDDLVHRGLESPEGLPDATLVVYVSPLKALSNDIQINLQNPLAGITEQLRVMGLPE
LQISTAVRTGDTPQKDRSAMRKTAPHILVTTPESLYVLLGSDSGRQMLGTAQTVIVDEIH
AMAASKRGSHLALSLERLQALCPEPLLRIGLSATQKPIEAVSRFLVGRDRPCEIVDIGHA
RPRDLDIEVPPVPLSAVMANDVWELVYDRLAALAREHRTTLIFVNTRRLAERLSRHLSER
LGKDAVAAHHGSLAKEFRLDAEQRLKRGDLQVLIATASLELGIDIGDVDLVCQIASPRSI
AGFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLLIPQAPLDVLAQ
QIIAEVSCQEWPEQALLEMLRRASPYAGLDDKHYQALLHMLAEGYNGRQGIRSAYLHRDA
VSRTLRGRRGAKLTAVTSGGTIPDNADYSVLLEPQGLNIGTINEDFAVESIAGDIFQLGN
TSYRILRVETGKVRVEDAQGQPPTIPFWLGEAPGRSAELSSAVARLQAQLDDLLGAAPGD
LQPALDWLTETLGLNIASAGQLVDYLARARQTLGALPSQDTLLMERFFDESGGTQLVIHT
PFGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDDVWRYLHSNSAE
HILIQAVLDAPLFGVRWRWNAGVALALPRYSGGRKVPPQIQRMKSEDLIASVFPDQIACV
ENLAGEREIPDHPLVEQTLDDCLHEAMDSQGWLALLRRMERGDIRLISRDLPAPSPLAAE
ILSARPYTFLDDAPLEERRTQAVLNRRWSDPQSTDDLGTLDAEAIAAVRNEAWPAPCGVD
EMHEALMSLACITDTEAGANPQWFDWLKTLADSGRASRLQINARQSLWLALERLTCLRAI
YPQAELTPSLQALPDFDEVWEADDAILELIRARLSAFGPLALERIAEPLGLPAAQVNQAL
AQLEREGYVLRGRFTPGATREEWCERHLLARIHRYTVKRLRREIEPVALQDFMRFLFDWQ
HVSSASQGQGAAVLPAVVAQLEGYPAAASAWDSDILPARIKDYSATWLDELCRSGRLVWT
RLTAHNKSASTALRSTPIVLLPRNRVGLWSGLTEQTPVSELSPKTQKVHAALNQHGALFF
DELIHEAHLLRSELEIALQELVGAGLVNADSFAGLRALITPASKRQPRNSRRGRGAFIGG
MDDAGRWALLRRTPVAPVVQNQRTPADTLEHIAMTLLRRYGVVFWRLLEREADWLPSWRE
LLRTFHRLEARGEIRGGRFVSGLAGEQFALPEAIPLLREVRLRPHDGSLVAVCGVDPLNL
AGTLLPGAKVPALASNRLVYRDGLAVAAEIAGKQQFWLELDERAMAEVRSKLIRH