Protein Info for PfGW456L13_1236 in Pseudomonas fluorescens GW456-L13

Annotation: Cell wall endopeptidase, family M23/M37

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF04225: OapA" amino acids 95 to 167 (73 residues), 36.1 bits, see alignment E=8.7e-13 PF19425: Csd3_N2" amino acids 186 to 306 (121 residues), 50.7 bits, see alignment E=2.6e-17 PF01551: Peptidase_M23" amino acids 319 to 415 (97 residues), 120 bits, see alignment E=6.3e-39

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_5099)

Predicted SEED Role

"Cell wall endopeptidase, family M23/M37"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QKF0 at UniProt or InterPro

Protein Sequence (458 amino acids)

>PfGW456L13_1236 Cell wall endopeptidase, family M23/M37 (Pseudomonas fluorescens GW456-L13)
LLAASGIAALLSLALLVFPSSDVEAKKTTLSLELESPAEQLTQEQDAADAVQATNEPATS
PFAQIDNSAEDTQETAQAEPAPVPVVEEKKTASHREVIVTKGDTLSTLFEKVGLPATSVH
DVLASDKQAKQFSQLKHGQKLEFELSPDGQLTNLHSKLNDLESISLTKNDKGYTFNRITA
KPTVRSAYVHGVINSSLSQSAARAGLSHSLTMDMASVFGYDVDFAQDIRQGDEFDVIYEQ
KVVNGKAVGTGPILSARFTNRGKTYTAVRYTNKQGNSSYYTADGNSMRKAFIRTPVDFAR
ISSKFSMGRKHPILNKIRAHKGVDYAAPRGTPIKAAGDGKVLLAGRRGGYGNTVILQHGN
TYTTLYGHMQGFAKGVKTGGTVKQGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKV
AMADPISKAERARFLAQSQPLMARMDQEKATQLASAKR