Protein Info for PfGW456L13_122 in Pseudomonas fluorescens GW456-L13

Annotation: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 49 to 67 (19 residues), see Phobius details amino acids 97 to 114 (18 residues), see Phobius details amino acids 120 to 142 (23 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 201 to 221 (21 residues), see Phobius details amino acids 267 to 284 (18 residues), see Phobius details amino acids 316 to 341 (26 residues), see Phobius details amino acids 354 to 380 (27 residues), see Phobius details amino acids 389 to 407 (19 residues), see Phobius details PF11862: DUF3382" amino acids 14 to 111 (98 residues), 76.1 bits, see alignment E=2.2e-25 PF02653: BPD_transp_2" amino acids 119 to 404 (286 residues), 168.3 bits, see alignment E=1.9e-53

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 94% identity to pfo:Pfl01_0554)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QIJ7 at UniProt or InterPro

Protein Sequence (427 amino acids)

>PfGW456L13_122 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) (Pseudomonas fluorescens GW456-L13)
MSSTTKKTIDLKRSLVDAILAGLVALIVFGPIVGVVLDGYGFNMETSRVAWIVAIVMAGR
FALSLFLQTPKGLRILEGFETTGSGVHVLPPDYKSRLRWIIPLMIVIAVVFPFFSNSYLL
GVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTVLPLAA
ITAGLAGCILGFPVLRLHGDYLAIVTLGFGEIIRLILNNWLTLTGGPNGMAAPLPTFFGI
EFGKRAKEGGVPFHEFFGIAYNPDVKYYFIYAVLFLVVLAVLHIKHRLTRMPVGRAWEAL
REDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFATYQGFVNPTSFTFFESALILAIV
VLGGMGSTIGVVIAAFVLTVAPELLRGFAEYRVLLFGILMVLMMIWRPRGLIRISRTGVT
PRKGVAP