Protein Info for PfGW456L13_1184 in Pseudomonas fluorescens GW456-L13

Annotation: SMC domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 transmembrane" amino acids 260 to 280 (21 residues), see Phobius details PF13304: AAA_21" amino acids 42 to 329 (288 residues), 60.9 bits, see alignment E=1e-20

Best Hits

Predicted SEED Role

"SMC domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QLN4 at UniProt or InterPro

Protein Sequence (372 amino acids)

>PfGW456L13_1184 SMC domain protein (Pseudomonas fluorescens GW456-L13)
MLRKFSVKNYRNFSDWLCFDLTSQQYEFNENAVSNGIVRHAMIYGPNGGGKTNLGLAMVD
PALHLTDSPSFFSSLDNNYINGSSAASIAEFIFEFCIDGTEIVYSYGKKSWNKLVYEHLS
INKSDILHIDRRESTLADIELKGAEHLKRDVGDSEISLLKYVKNNSILDETPTNSVFSKL
LDFIEGMVFFRSLNATNKGEYVGKDIGVKRLSQSIIESDSIKDFEKFLNDAGIECSLVVG
ADTNNSNGKSIFFDFGEIKLEFGSVASTGTLSLGIFYFWWLRLKNGAVTFAYIDEFDAFY
HHALASTIVEKVIALQAQTIMTTHNTGVMSNDLLRPDCYFVLDKTISPLTALTEKDLRKA
HNLEKIYKGLSS