Protein Info for PfGW456L13_1169 in Pseudomonas fluorescens GW456-L13

Annotation: Coenzyme PQQ synthesis protein F

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 809 TIGR02110: coenzyme PQQ biosynthesis protein PqqF" amino acids 11 to 710 (700 residues), 829.1 bits, see alignment E=2e-253 PF00675: Peptidase_M16" amino acids 19 to 142 (124 residues), 100.4 bits, see alignment E=9.2e-33 PF05193: Peptidase_M16_C" amino acids 180 to 320 (141 residues), 44.1 bits, see alignment E=2.2e-15 amino acids 644 to 730 (87 residues), 23.2 bits, see alignment E=5.8e-09

Best Hits

KEGG orthology group: None (inferred from 69% identity to pfo:Pfl01_5156)

Predicted SEED Role

"Coenzyme PQQ synthesis protein F"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QKX7 at UniProt or InterPro

Protein Sequence (809 amino acids)

>PfGW456L13_1169 Coenzyme PQQ synthesis protein F (Pseudomonas fluorescens GW456-L13)
MPALNHPHPHTETLANGLRVTLRHAPDLKRCAAALRVAAGSHDVPLAWPGLAHFLEHLLF
LGTERFPAGQGLMAYVQSHGGQVNARTGERTTDYFFELPPQAFAGGLERLSDMLAHPRMN
PDDQQREREVLQAEFVAWSQDAKAQQQFALFNGLAEAHPLRGFHAGNRDSLPLQQPEFQQ
ALQDFYQRFYQTGQMTLSLAGPQSLVELKAMAEAFGSVIAKGQTATQLPPVPLMDASTNS
YQQTGERRLDLLFALEVLPDFSADALAFLCHWLNLAKPGGLMADLRERGLADHLKAQPLY
QFAGQALLHIEFTLPTANSATGIRERLMDWLGFFAAQDWNQLREEYATLLQRQQQVSGAL
QLARLDSEQREVGLSEPGVTALKQILQQIGAVDNFSGPWQLPAPNPFLCSEAPAANAGLI
RGQTSAHRGLRTFAQDRSRSRRERSPMQFSQAWPDNGAEGAIYLRWRLDSAPGSHLQSRL
ENYLQPLREDAHQAGVEFSFSASGNEWLLKLNGLQEPMPSVLEHALKELTKPDAAVSQAE
STSVAPIPIRQLLKALPEYCLGQSANSDDVQPLWSSARWDGLAIGLSAQTQAAMGLALSR
IPGTPDNQLTPPSSILARHLWSTVDTASSEHALLLFCPAATPEMADEAAWRLLAHICQTP
FYQRLRVELQLGYAVFSALRQIHGQTGMLFGVQSPSVAPVELLQHIEQFLNRLPELINAL
DDTTFNAQRQALADQFCSAALTTAQAAELLWQGKLAGRSSDYLTHLPEAIVRIDRTVLLA
AAQRLNQAEGGWLCLANSVTPGAPWQAAK