Protein Info for PagCFBP13505_RS21005 in Pantoea agglomerans CFBP13505 P0401

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 PF12852: Cupin_6" amino acids 6 to 195 (190 residues), 101.3 bits, see alignment E=1.1e-32 PF02311: AraC_binding" amino acids 36 to 86 (51 residues), 21.2 bits, see alignment 4.1e-08 PF00165: HTH_AraC" amino acids 222 to 261 (40 residues), 31.3 bits, see alignment 3.4e-11 amino acids 277 to 310 (34 residues), 29.1 bits, see alignment 1.7e-10 PF12833: HTH_18" amino acids 233 to 311 (79 residues), 69.8 bits, see alignment E=4.1e-23

Best Hits

KEGG orthology group: None (inferred from 97% identity to pva:Pvag_3554)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (321 amino acids)

>PagCFBP13505_RS21005 AraC family transcriptional regulator (Pantoea agglomerans CFBP13505 P0401)
MSHYGDLTSELLMGMRLYGVNYQRIAVSAPFGLRYEHAPGRAQFHFVGRGSLMVRSASGE
VFQLNSGDALLVPHGKPHSLISSEEASCQCIKNMASKPLCDSVCAITAPEDACDDEHSVL
LFSACMAFELGGMQPLINTMPDVMLVSTLLSQYPEIQPILAAMERESRTRQAGFAGILSR
LADVVAALIVRGWVENGCGERSGLVQAMRDPRLSQAIAAMHREPGENWTVARLASVAGCS
RSVFAGRFLNATGMTPLRYLTELRMRLAVQRIVNNGEAVEAVAYHLGYGSIAAFSRAFKR
IVGQSPGALRAGRDGTQALAS