Protein Info for PagCFBP13505_RS21000 in Pantoea agglomerans CFBP13505 P0401

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 282 to 301 (20 residues), see Phobius details amino acids 306 to 330 (25 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details amino acids 370 to 389 (20 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 337 (313 residues), 141 bits, see alignment E=4.7e-45 PF00083: Sugar_tr" amino acids 55 to 193 (139 residues), 31.4 bits, see alignment E=1e-11

Best Hits

Swiss-Prot: 50% identical to NEPI_SALTI: Purine ribonucleoside efflux pump NepI (nepI) from Salmonella typhi

KEGG orthology group: None (inferred from 99% identity to pva:Pvag_3555)

MetaCyc: 50% identical to purine ribonucleoside exporter (Escherichia coli K-12 substr. MG1655)
RXN0-18; RXN0-22

Predicted SEED Role

"Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (395 amino acids)

>PagCFBP13505_RS21000 MFS transporter (Pantoea agglomerans CFBP13505 P0401)
MSLTTEVADEVSSPTRPAWGAVFAMAFGVFSLITAEFLPVSLLTPMAHSLGVSEGQAGQT
VTITALVALFTSLVTGSVTRRIDRRIVMLVFSLLLIASALMVAFAADLTVILLARVLLGM
AIGGFWTLSTAITMRLVPTDQVPRALSIVFSGISLATIIATPLGSYLGGLVGWRNIFMLT
AGLGAVALLWQFFTLPAMPAENKASNGGVLALLRIGVMRWGMLAVIMMFTGHFAFFTYLR
PFLESVAQLNLNQLSLVLLAFGVANFFGTSLAGFLVTRSVSLTLSGMALLMSVTALLLVS
FGDVSWMVGAGVAIWGMAFGSMPTGWSTWISRAVPDDAESGGGLLVATIQLAITVGAAAG
GWMFDLRGAGGVFVASGVLMLLAALTIFTRVRHHG