Protein Info for PP_5251 in Pseudomonas putida KT2440

Annotation: putative Transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 82 to 105 (24 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 143 to 168 (26 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 228 to 249 (22 residues), see Phobius details amino acids 261 to 279 (19 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details amino acids 315 to 337 (23 residues), see Phobius details amino acids 349 to 370 (22 residues), see Phobius details amino acids 377 to 396 (20 residues), see Phobius details PF05977: MFS_3" amino acids 7 to 524 (518 residues), 686.5 bits, see alignment E=2.1e-210 PF07690: MFS_1" amino acids 20 to 356 (337 residues), 114.3 bits, see alignment E=6e-37 amino acids 257 to 411 (155 residues), 35.7 bits, see alignment E=5e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_5251)

Predicted SEED Role

"MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88CD0 at UniProt or InterPro

Protein Sequence (532 amino acids)

>PP_5251 putative Transporter (Pseudomonas putida KT2440)
MSTSPSGAWSPLRNTTFRMLWIATIASNIGTWMHEVGAGWLMTTLSASPLHVALIQVAGS
LPMFFLALPAGAAADIVDKRRYLLLVQLWMSCVAVVLAALTLLGMMNVTSLLVLTLALGI
GTALMMPAWSALTPELVRKEDLANAVALSSVGINVSRAIGPALAGVVVSMVGPWLTFALN
AISFAGVILVLFLWKREVKEPLLPAERFVGAMRTGLRFARSAKPLQAVMLRALAFFFCAS
AGTSLLPLIVRGEMRGTAADFGLLLAAIGIGAVAGATLLPRLRERISRDRLVLLASLLYA
LFLLALALVRNFYALLPAMLLSGAAWIAVLSNLQVAAQTSVPAWVRARALSVYILIFFGA
MACGGLLWGTLASHATLTFSLLVAAGGLALGTLLTCKVALPETEAEELTPSLHWPVPVLS
DDMDKEAGPVMVTVEYHIAPTKAEAFQQAARELEAMRKRNGALSWGLMRDSADPALWLEF
FFEESWLEHLRHHHRVTRGELKIEARVRMLQTDGVEVRIRHLLAGGEHKAHH