Protein Info for PP_5230 in Pseudomonas putida KT2440

Annotation: Tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 PF02899: Phage_int_SAM_1" amino acids 5 to 88 (84 residues), 73.1 bits, see alignment E=1.8e-24 TIGR02224: tyrosine recombinase XerC" amino acids 7 to 293 (287 residues), 351.4 bits, see alignment E=2.2e-109 PF00589: Phage_integrase" amino acids 111 to 279 (169 residues), 147.9 bits, see alignment E=2.6e-47

Best Hits

Swiss-Prot: 100% identical to XERC_PSEPK: Tyrosine recombinase XerC (xerC) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 100% identity to ppu:PP_5230)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88CF1 at UniProt or InterPro

Protein Sequence (299 amino acids)

>PP_5230 Tyrosine recombinase XerC (Pseudomonas putida KT2440)
MKRQLEAYCAHLRNERQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARL
HHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPANGLSAPKGERRLPKVLDTDRALQLL
DGGVDDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVG
RKAREALQAWYRLRGIGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLR
HSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRSKGTDS