Protein Info for PP_5207 in Pseudomonas putida KT2440

Annotation: ribosome-associated ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 906 transmembrane" amino acids 554 to 575 (22 residues), see Phobius details amino acids 711 to 734 (24 residues), see Phobius details amino acids 761 to 782 (22 residues), see Phobius details amino acids 789 to 812 (24 residues), see Phobius details amino acids 819 to 841 (23 residues), see Phobius details amino acids 849 to 867 (19 residues), see Phobius details amino acids 879 to 901 (23 residues), see Phobius details PF00005: ABC_tran" amino acids 21 to 169 (149 residues), 102.5 bits, see alignment E=7.8e-33 amino acids 285 to 428 (144 residues), 97.1 bits, see alignment E=3.6e-31 PF13304: AAA_21" amino acids 136 to 193 (58 residues), 30.9 bits, see alignment 7.1e-11 amino acids 403 to 458 (56 residues), 33.8 bits, see alignment 9.4e-12 PF12679: ABC2_membrane_2" amino acids 540 to 837 (298 residues), 46.7 bits, see alignment E=6.7e-16 PF12698: ABC2_membrane_3" amino acids 557 to 898 (342 residues), 152.7 bits, see alignment E=3.8e-48 PF01061: ABC2_membrane" amino acids 709 to 869 (161 residues), 60.4 bits, see alignment E=4.6e-20

Best Hits

KEGG orthology group: K13926, ribosome-dependent ATPase (inferred from 100% identity to ppu:PP_5207)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88CH4 at UniProt or InterPro

Protein Sequence (906 amino acids)

>PP_5207 ribosome-associated ATPase (Pseudomonas putida KT2440)
MNAPALLAEGISHRYGDLIALHPLGFSLPVGTRCALIGPDGAGKSTLLGLIAGVKRLQQG
ELQVLGGSIRQRRHRTALYPKVAFMPQGLGNNLYPELSISENIRFFATLFGLGRRECEQR
MANLLQATDLQHFAQRPAGKLSGGMKQKLGLCCALIHEPDLLILDEPTTGVDPLSRRRFW
ELVEQVRAQRPQLTLLVATAYMEEAEQFEHCLMLDGGRLLAAGPSHELAAVTSSGKLDDA
FTHYQGAGKAQHQPLAIPPRQATDGPVAIEAHDLTLRFGDFTAVNKVSFAIGRGEIFGFL
GSNGCGKTTTMKVLTGLMPASEGSASLLGRPVDASDLATRKRVGFMSQSFSLYGELSTRQ
NLALHARLFDLPKAESAQRIDELIERFDLAAIADQPSGALPLGLRQRLSLAVAVLHRPEV
LILDEPTSGVDPAARDDFWRLLVELSREQGVTIFLSTHFMNEAQRCDRISLMHAGRVLAC
DTPDALQHQYQGDTLEDAFVRCLEQAQELAPAATDSNVLEQASTPTLPLRRGFSLRRLLA
VAVREGKELLRDKVRLAFALLGAVFMMVIFGYGISLDVENLAFAVHDQDQSPQSRAYLEA
FRGSRYFAEQAPIRDSSELHQRLQRSEIKLALEIPPGFGRDLYAGRQPVVAAWLDGGMPF
RAETSRNYVEAVHQANLEQLAKASPQPQPRQDPVRLETRFRYNQDVVSVNAIGPGVMALI
LAFIPAMLTALGIVREKELGSITNFYATPLTRLEFLLGKQMPYLAVSLVNLALLVAMNRW
LFAVPLKGSVLALACGGVAYLLATTSLGLLISAFTRTQIAAILGTMIITSLPTIQFSGLI
VPRSSLDGAAAVMGQLFPAGYFLDIAVGTFTKALGLRELWPQCLILLSFFAAFTGLSLAM
LKKQEA