Protein Info for PP_4914 in Pseudomonas putida KT2440

Annotation: putative phytase-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF13449: Phytase-like" amino acids 52 to 200 (149 residues), 43 bits, see alignment E=5.6e-15 PF06977: SdiA-regulated" amino acids 122 to 207 (86 residues), 24.6 bits, see alignment E=1.3e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_4914)

Predicted SEED Role

"FIG00953138: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88DB3 at UniProt or InterPro

Protein Sequence (341 amino acids)

>PP_4914 putative phytase-like protein (Pseudomonas putida KT2440)
MAGNQRQPGRGHGLIRQVLAVCLALVALPCLAGNWPELKMTAEHPIDGMRGGNLSGLVEC
RGGLWGVSDRDDDRIYRFDQQNPTWRAQPLTFTPPAVPESGLPWGLKSRNWAASYIRGGE
LDFEGITCDQAGNLYLVSEAHAAVLQLPLEGEPDWLRIDSAMVRQARASGMLLNFNALFE
GLAINPAGDRLWLAAERERRGLVAIERQQSVWTCGRGCVLLSEAGVEMQPAQMPNARALS
RDFADLAWFEGKLFTLERNAYRVCRRDIDSGKVERCWSFAADALVESRRYAQPFGLAEAL
VIDAKGAWIGLDNNNGARADGETRPVVWRFDAPEGGWSAKP