Protein Info for PP_4842 in Pseudomonas putida KT2440

Annotation: putative Urea ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 206 to 230 (25 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 262 to 282 (21 residues), see Phobius details amino acids 295 to 316 (22 residues), see Phobius details amino acids 344 to 363 (20 residues), see Phobius details amino acids 399 to 405 (7 residues), see Phobius details amino acids 427 to 453 (27 residues), see Phobius details amino acids 461 to 480 (20 residues), see Phobius details TIGR03409: urea ABC transporter, permease protein UrtB" amino acids 201 to 492 (292 residues), 435.3 bits, see alignment E=6.8e-135 PF02653: BPD_transp_2" amino acids 204 to 478 (275 residues), 146.7 bits, see alignment E=7.9e-47

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 98% identity to ppf:Pput_4720)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtB" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88DI3 at UniProt or InterPro

Protein Sequence (495 amino acids)

>PP_4842 putative Urea ABC transporter (Pseudomonas putida KT2440)
MLRLLLTLLLLIPLATHASEGEFFLTAKPAEQAGLLEGWAAQPDAARLPLLENLRQGRIA
TNDKRKVRLNNRLRGLIDNALASHQLLSDNSETRLAAAQQLQKSAQPAQMAFLDRRFAAE
PDAAVQAALGLALANLQLGASEPAVRLAAVRLLGETGDPLARTRLEALLQPDAELDPGVR
TAAETSLAQVKRKLLLGELLGQAFSGLSLGSVLLLAALGLAITFGLLGVINMAHGEMLML
GAYSTYMVQVLLQRFAPGAIEFYPLIALPVAFAVSAGVGMALERTVIRHLYGRPLETLLA
TWGISLILIQAIRLLFGAQNVEVSNPAWLSGGIQLLPNLVLPYNRLVIIGFALAVVLLTW
LLLNRTRLGLNVRAVTQNRNMAACCGVSTGRVDMLAFGLGSGIAGLGGVALSQVGNVGPD
LGQSYIIDSFLVVVLGGVGQLAGSLWAAFGLGIANKLLEPQIGAVLGKILILALIILFIQ
KRPQGLFALKGRVID