Protein Info for PP_4501 in Pseudomonas putida KT2440

Annotation: Probable intracellular septation protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 66 to 83 (18 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details PF04279: IspA" amino acids 1 to 188 (188 residues), 208.7 bits, see alignment E=4e-66 TIGR00997: intracellular septation protein A" amino acids 1 to 189 (189 residues), 183.2 bits, see alignment E=2.5e-58

Best Hits

Swiss-Prot: 100% identical to YCIB_PSEP1: Probable intracellular septation protein A (Pput_1411) from Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)

KEGG orthology group: K06190, intracellular septation protein (inferred from 100% identity to ppu:PP_4501)

Predicted SEED Role

"Intracellular septation protein IspA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P59364 at UniProt or InterPro

Protein Sequence (197 amino acids)

>PP_4501 Probable intracellular septation protein A (Pseudomonas putida KT2440)
MKQFIDFIPLLLFFIVYKLDPRPMEVAGHHFEFGGIYSATAMLIISSLVVYGALFLRQRK
LEKGQWLTLIACLVFGGLTLTFHSETFLKWKAPVVNWLFALGFAGSHFIGDRVLIKRIMG
HALTLPDAIWTRLNLAWIAFFLFCGAANLFVAFTFQDFWVDFKVFGSLGMTVIFLVAQGV
YLSRHLHDDPSTSKPKD