Protein Info for PP_4483 in Pseudomonas putida KT2440
Annotation: histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 94% identical to AOTP_PSEAE: Arginine/ornithine transport ATP-binding protein AotP (aotP) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
KEGG orthology group: None (inferred from 100% identity to ppf:Pput_1432)Predicted SEED Role
"Arginine/ornithine ABC transporter, ATP-binding protein AotP" in subsystem Arginine and Ornithine Degradation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q88EI0 at UniProt or InterPro
Protein Sequence (254 amino acids)
>PP_4483 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit (Pseudomonas putida KT2440) MYKLEVQDLHKRYGSHEVLKGVSLAAKAGDVISIIGSSGSGKSTFLRCINLLEQPHAGKI LLNNEELKLVPGKDGALKAADPRQLQRMRSRLSMVFQHFNLWSHMTALENIIEAPVHVLG VNKKEALEKAEHYLAKVGVAHRKDAFPGHMSGGEQQRVAIARALAMEPEVMLFDEPTSAL DPELVGDVLKVMQALAQEGRTMVVVTHEMGFAREVSNQLVFLHKGLVEETGCPREVLANP QSERLQQFLSGSLK