Protein Info for PP_4154 in Pseudomonas putida KT2440

Annotation: putative class 3 aminotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 976 PF01636: APH" amino acids 52 to 275 (224 residues), 88.5 bits, see alignment E=6.5e-29 PF00202: Aminotran_3" amino acids 574 to 972 (399 residues), 210.7 bits, see alignment E=3.2e-66

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_4154)

Predicted SEED Role

"aminotransferase, class III"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88FE3 at UniProt or InterPro

Protein Sequence (976 amino acids)

>PP_4154 putative class 3 aminotransferase (Pseudomonas putida KT2440)
MSSPQHQPASPALATLIQRSGQPSPTLSEAQAHAVLQAHYGLAGNLSVLGSQQDLNFRVV
TPQGGYVLKACHGSYAQLELEAQHAALAFLRDQGLPVPAVRSAHNGMGLLELDIDAQPLR
LRLLDYIEGQPLTRLKHMEPRLMAELGGLCAKLDKALAHFDHPGLARTLQWDPQHAGALI
DHLLPVLQDGGQRARIEHATRQANEHLMPLVDQLPSQAVHLDITDDNTVWARDAQRQWQL
QGVIDFGDLLRTWRIADLSVTCAALLHHAEGDPLRILPAVQAYQALNPLTEAELRALWPL
VLNRAAVLVLSSEQQLTVDPGNQYTRDNIAHEWEIFDTATAVPFALMEAAILQAAGLQPA
APDWNDCAPLLPELAGLAVTRVDLGVLSKHFEAGNWEQPGYDQHLLTSQAAPACSLHGQY
RLSQTHIDRPEEPATCALFVELHVPNGSPVQAPAAGTWQHSGDGRGCLRTPHWALWLQGL
EDAPADGQAVEKGQALGSSCGFLSVQVCLDNGSQPPRFATPSQAAAWLALCPSPAALLGF
DCDAEPLPDPQALLARRDASFARSQKHYYAQPPHIERGWRNYLIDMQGRSYLDMLNNVAV
LGHGHPRMVAESARQWSLLNTNSRFHYAAITEFSERLLDLAPEGFDRVFMVNSGTEANDL
AIRLAWAYSGGRDLLSVLEAYHGWSVATDAISTSIADNPQALETRPDWVHPVEAPNTFRG
RFRGADSAADYLQDVDAKLADLDARGRQLAGIICEPVYGNAGGISLPAGYLRAAYAKVRA
RGGVCIADEVQVGYGRLGEYFWGFEEQGVVPDIITMAKGMGNGQPLGVVITRREIAEALE
AEGYFFSSAGGSPVSCRIGMAVLDVMQEEGLWDNARDTGRYFKARLQALVDKHPLAGAAH
GSGFYLGLELVRDRTTLEPATEETMMLCDRLRDLGIFMQPTGDYLNILKIKPPMCTSRAS
VDYFVDSIDRVLGEGL