Protein Info for PP_4085 in Pseudomonas putida KT2440

Annotation: putative RHS family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1530 transmembrane" amino acids 27 to 50 (24 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 264 to 281 (18 residues), see Phobius details PF05488: PAAR_motif" amino acids 191 to 235 (45 residues), 44.4 bits, see alignment (E = 4.1e-15) PF20148: DUF6531" amino acids 289 to 369 (81 residues), 57.6 bits, see alignment 3.4e-19 TIGR01643: YD repeat (two copies)" amino acids 631 to 668 (38 residues), 30.9 bits, see alignment (E = 2.8e-11) amino acids 677 to 711 (35 residues), 22.4 bits, see alignment (E = 1.3e-08) amino acids 703 to 730 (28 residues), 18.3 bits, see alignment (E = 2.5e-07) amino acids 734 to 774 (41 residues), 18.1 bits, see alignment (E = 3e-07) amino acids 764 to 796 (33 residues), 16.9 bits, see alignment (E = 7.4e-07) amino acids 800 to 837 (38 residues), 35.2 bits, see alignment (E = 1.1e-12) amino acids 839 to 875 (37 residues), 24.4 bits, see alignment (E = 3e-09) amino acids 921 to 955 (35 residues), 29.3 bits, see alignment (E = 8.7e-11) amino acids 965 to 994 (30 residues), 21.7 bits, see alignment (E = 2.2e-08) PF05593: RHS_repeat" amino acids 631 to 664 (34 residues), 31.4 bits, see alignment (E = 5e-11) amino acids 703 to 725 (23 residues), 28.2 bits, see alignment (E = 5e-10) amino acids 755 to 791 (37 residues), 31.3 bits, see alignment (E = 5.2e-11) amino acids 798 to 830 (33 residues), 28.2 bits, see alignment (E = 4.9e-10) amino acids 839 to 874 (36 residues), 26.8 bits, see alignment (E = 1.4e-09) amino acids 921 to 951 (31 residues), 26.9 bits, see alignment (E = 1.3e-09) amino acids 965 to 1000 (36 residues), 31.3 bits, see alignment (E = 5.2e-11) PF03527: RHS" amino acids 1301 to 1338 (38 residues), 56.1 bits, see alignment (E = 6.4e-19) TIGR03696: RHS repeat-associated core domain" amino acids 1331 to 1407 (77 residues), 73.1 bits, see alignment 2.1e-24 PF15652: Tox-SHH" amino acids 1424 to 1525 (102 residues), 124 bits, see alignment 1e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_4085)

Predicted SEED Role

"Rhs-family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88FK6 at UniProt or InterPro

Protein Sequence (1530 amino acids)

>PP_4085 putative RHS family protein (Pseudomonas putida KT2440)
MAQTVHAARMGDAILHPSLAAEMISAVAEAVIYAAATAAVAAAISLAVVGTVATGGAAGV
AIAAVAGVAVGAVSTLSVGEDQTVGDAISSFCDSLGNSVDSPDPYGKIESGSTNVLINSE
PAARAAGITGPPGGGAADTEQEEPSILENVGSMAMAAVPYLVPFVGLGMAIRDIFNPPVT
TPANPGSEPAEGDKISCSRHPPLPDTFIAQGSDKVFINGQPAARSGDKTTCDATIDVNEN
VSPNVRIGGGTATVRDIRNGKSKIAMFTGIIAGMLISRRFGRIKGCTLGNPVAVATGSKL
QEGPEDIDFNLPGLLAIQWARRYDSRDMRSDGLLGMGWSVPYEVELARVPHPQGGTLWIY
IDNDGNRLELGRLSAGDAFISAVDGLAFFQLEDGQTVVEDINEGLYRVFDTDPLNPKRSR
LIRLGDRNLNCLDLLYDEQGRLKALYDKYGQTVVQLHYAARHPQRVSEVSRVFLKNGGTP
TVERSELLVSYRYTDNGQLHEVLDATDQRVRRFTYTPEGYLNSHQLASGAVREYEWARFA
IPETRPTPKRLDGTPYRLPPLLEPQPDHEWRVIRHWGSDGEEYRFEYNLEAGETLVTDNL
GRRDHYYWGPLYEVYKHIDPQGNCWLAEVIAGQLIKRIDPQGGEWRYSYDDIGRLIETRD
PLGRSEHIKYLRHWALPIQVTDTAGRTRQYGYDSHGNLLWQQDPLGRETQYQYDPEGRVT
QVTDALEKSKYLSWNTCGQLLSYRDCSNAQTLYHYDAHGRLRESINARGEHTHFRYDARG
YLVESERPDGRIDRYEIDVAGQLTRYIDPAQKTLQFRYDPSGRLVERTDAMGYSVKFRYD
AYGRLLQLTNENDESYRFGWDELDRLVAQKDLDGSGRLYAYNVLDEVIRLTHVPSPDEQP
PLSDNAPPTRTTAIRHDFERDAIGRLVSKRTEDGTTDYRYDAADNLLSITFTDNKGEKQQ
LDYTYDANGQLLSETNSAGLLQYRYDELGNLQTLVLPDQRELNHLYYGSGHLHQINLNGR
VISDFERDAVHDEVLRTQGKLVTRTRYDTSGRLAGKAIHYRDAPAEVLPLLDKAYRYDAS
DNLIAEVLTQTQRRGMSNAANDENANLEQIIGRFLDLPHTGKTYSGHNRYGYDLNEQLQT
VHQSRPNWQATQVEDFKYDKAGNLFDGPKLNGLIKHNRVLVYQDKRYRYDRFGRLCEKRI
GSNWVQYFEYDAEQRLVCVEQYRSGERERVVFAYDPLGRRISKEVYQRDYPEPRRRVLFH
WQGFRLLQEVQSGLASLYVYATVESYDPLARVDGKPGSEAIHYFHTTLVGQPEQLTDSDG
NTIWRSDHHGWGKIINEWHSQQNGREQNLRNQGQYIDRETGLHFNIFRFYDPDIGRFTTT
DPLGIEGGVNLYSYAPNIVNYSDPLGLCPENVKEYDITPYRPSNSPLENHHGILDIWAAQ
NVPSYGGKYPKGSPTIVLSSKNHAATKAVYREWLREKTGKPVGGKVDWSQISNREVMQLS
ERMFDVAGVPATSRTSYYRALNRYLHTGTF