Protein Info for PP_3882 in Pseudomonas putida KT2440

Annotation: putative Phage terminase, small subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 TIGR01558: putative phage terminase, small subunit, P27 family" amino acids 37 to 153 (117 residues), 80.7 bits, see alignment E=4e-27 PF05119: Terminase_4" amino acids 48 to 144 (97 residues), 92.4 bits, see alignment E=1e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3882)

Predicted SEED Role

"Phage terminase small subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88G44 at UniProt or InterPro

Protein Sequence (155 amino acids)

>PP_3882 putative Phage terminase, small subunit (Pseudomonas putida KT2440)
MAGRRPTPTELKLVRGNPGKRPINKNEPQPAKRIPSAPDHLSSDGQVAWGRLTVLLDRMG
VLTEADGFALERLCDCYSEILALRDVIGEQGRTYETTSTQGELVLKANPAVAMLADVDRR
FKSYLVEFGLTPAARSKVQVKDDEPKEDQFAEFFG