Protein Info for PP_3734 in Pseudomonas putida KT2440

Annotation: putative ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 819 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 241 to 264 (24 residues), see Phobius details amino acids 284 to 314 (31 residues), see Phobius details amino acids 338 to 357 (20 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details amino acids 416 to 439 (24 residues), see Phobius details amino acids 459 to 479 (21 residues), see Phobius details amino acids 684 to 708 (25 residues), see Phobius details amino acids 729 to 762 (34 residues), see Phobius details amino acids 777 to 801 (25 residues), see Phobius details PF02687: FtsX" amino acids 243 to 367 (125 residues), 35.3 bits, see alignment E=1e-12 amino acids 692 to 808 (117 residues), 45 bits, see alignment E=9.9e-16 PF12704: MacB_PCD" amino acids 463 to 653 (191 residues), 46.3 bits, see alignment E=6.3e-16

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to ppu:PP_3734)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88GI8 at UniProt or InterPro

Protein Sequence (819 amino acids)

>PP_3734 putative ABC transporter, permease protein (Pseudomonas putida KT2440)
MKLLSLALLALLSHWRRHRVQCFSIFTGLWLATALWTGVQALNSQARSDYARASAVLTGP
LQAQLIARNGERFDQALYVQLRRLGWAVSPVLEGRLRLPGEPARSVRLIGIEPLSLPPAS
SIAGVQVQAFDLQAFVGSPGQAWVGPDTLRQLNTSPGSPTRDSEGQLLPPMVLQPALAPG
VIVVDIGHAQTLLNAPGQLSRLLLADTPGPLPADIARYLELQPRQDDGGLQRLTDSFHLD
LTALGLLAFVVGLFIAHAAIGLALEQRRGLIRNLRACGVSLKTLLCALVLELGLFAALGG
LAGVASGYALAAWLLPDVAASLRGLYGAQVAGTLSLPAGWWLLGVLVSVLGALLAGLESV
MRAARLPLLALAQPQAWRLAQGPWLQRQALLAGLLLLLALGCGVFGAGLLSAFAMLAGLL
LAAALLLPALLDQVLAWLARRCHRPLAQWFVADSRQQLPALSLALVALLLALAASVGVGS
MTEGFRKTFVGWLDLRLSADLYVTPRDTAQGLQIVEWLKQQPGASVVMPGWRADMQLQGW
PVQVQGIVDHPAYRTRWPLLEQHSRAWQQLASGQAVMLSEQLARRLNLQLGDSLKLPAGT
PAMPVVGIYADYGNPKGHVLVNAGWLRAHWPQATLAGLSVDLNAEGVASLKAALQQHFAL
DDSRVVEQARLKRWSTDVFNRTFAATAALNSLTLGVAGVALFINLLTLGQARLGQLAPLW
ALGVRRMQLVWLSLGQTLMLSGFTVLLAIPLGLLLAWCLVAVVNVQAFGWRLPLYVFPVQ
LLQLTVLGMLTSLLACAWPLWQLARRPPRELLRPLSDEA