Protein Info for PP_3691 in Pseudomonas putida KT2440

Annotation: DNA helicase-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2207 PF13195: DUF4011" amino acids 405 to 577 (173 residues), 176.9 bits, see alignment E=1.2e-55 PF13086: AAA_11" amino acids 692 to 755 (64 residues), 29 bits, see alignment (E = 3.3e-10) amino acids 1553 to 1594 (42 residues), 35.7 bits, see alignment (E = 2.9e-12) PF13087: AAA_12" amino acids 1614 to 1809 (196 residues), 57.5 bits, see alignment E=5e-19 PF18741: MTES_1575" amino acids 1859 to 1956 (98 residues), 113 bits, see alignment (E = 2e-36) PF11784: DUF3320" amino acids 2057 to 2106 (50 residues), 73.6 bits, see alignment (E = 3.4e-24)

Best Hits

Predicted SEED Role

"DNA helicase related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88GN0 at UniProt or InterPro

Protein Sequence (2207 amino acids)

>PP_3691 DNA helicase-related protein (Pseudomonas putida KT2440)
MDDIVQPLKAQEEIPPKEVKILATLVAKLNLADFQNAIPVIRELRIANETEDRFVNATLT
LTSDPEVFKPKVWRIDEVAADSFRIIPGLDLVLDGPLLSRLTEAELSTFTFVFEADDKEA
ESGRKEVARIEQVVDLLPRNQWGGLRHIPDMTAAFVQPNDPAVERLLKQTAELLRQSELS
SSLDGYEGGAKRAWQLASAVWSAVARMKLDYALPPASFEQSGQKVRSPSQIADTGLATCM
DLTLLFCAALEQIGLNPVIVFTRGHAFAGLWMKAEEFTTALIDDVTAVRKRVKLRELVLF
ETTLSTQNLVPTFSYAVERGEKQIAEDADSEFEMLLDIRRARLQRIKPLASAEAQIARIA
DEVSDDSPSLLVEDGAGIPDEIHEVVVEDLSKLDPADRLGRWQRKLLDLSLRNNLLNFKM
AKRALKLESPDPGALEDILASGQSLKLLTRPDLMDGADPRERALYEQREREDVRRRHAED
ALKRREVFVALTSNEMDVRLTELYRGARTALQEGGSNTLFLAIGFLSWTREDRAGQKYKA
PLVLVPVTLERKSARSGFTMVLHDDEPRFNPTLIEMLRQDFELGLGSLEHELPRDDSGLD
IAGIWNKVGHAIKDIPGWELSEDVVLSMFSFAKYLMWKDLAENAEHLRQSPVVQHLLDTP
RDSFVSDTPFPEAESLDRDYGPTDVFCPLPSDSSQLSAVMAAAKGKDFVLIGPPGTGKSQ
TISNMIAQSIAQGRRVLFVSEKIAALDVVYRRLREIGLGEFCLELHSSKARKTDVLAQLQ
SAWEAKGQLDSAAWEVEAQRLATLRDSLNIYVERLHRRHRNGYSIYDAIGTVTSGGDEAV
APVGWASPDTHDQKAMLELRELGDRLEVNAQAVGYSLLAGNALSAVGQAEWSPHWQQQFV
QAARDVLPVVLDVQRAADRFVELAGLPVTEYTPTALEGLSVLSQALPAAAGQDWRFALRP
DARSISQRLSDGCAWVEQHRALNVKLSPLWSSRVMADAKQGIELLQQRRTTFGELSPAWP
ESVTDVLAQAVALLGQIVELKQQLSATYGDTIESLDIDLLLREWKEAEEAFWPKSWFGKR
RIAGLLAPSQTTAGEADHGKDLATWAEIRAVRRAIDELEPGHECVVVWQGSKSVAEQLST
SIKLQEAIRLQQADSDWIDDGLQLVEQGQLGDGLKEELRRLRTLTRLDSDMSALSDLGSS
TQQLWCGKDTNIELLTAALRFQAERRDIEERGRLVDDHPEVQEGRCGALLKGDFDLLKQR
AAVERDLSDLADLRELVPVWSDLKTKLEIARQAVAFQGQVATAVAKLALNPEQIAAYKAP
LQTLLGDGNALLEPAGAIALAGVGLRERLALLQERSSHLTSIGHFTEAGTDETAHLSLDD
LKKSCETVVSSEARLKAWCAWRKVRDEAFAVGLAPIVQAMERGAITSGKVRRVFEVNYAR
WWLNTTVDNEEVIRTFVSVEHEQRIRDFRALDDKFTELTKDWLRARLCADLPSQDSVSRS
SEWGLLRHEMGKKTKHIPLRELMTRAPEALTKLTPCLLMSPLSIAQYLPPASTPFDLVIF
DEASQIPVWDAIGAMARGKQVVMVGDPKQLPPTSFFDRAESTAEDEDVEADLESILDECI
SANLPMRNLNWHYRSRHESLIAFSNQRYYGSKLVTFPSPFTADKAVKLCPVAGVYDKGGS
RTNLIEARALVADLVARLQSSAFRESRRTVGVVTFNGEQQKLIMDMLDEACRKDPSLDSY
FAESELEPVFVKNLESVQGDERDIIYFSTTYGKDAAGVMSMNFGPMNRPGGERRLNVAIT
RARQELVLFSTLRPEHIDLARTQAVGVRDLKHFLEFAERGPRALAEANFGSVGGFDSPFE
EAVAAALAKKGWQVHTQIGVSSFRVDLGVVHPDAPGRFLAGVECDGATYHRSATARDRDK
LREFVLRGLGWEIVRIWSTDWWVDAVGTAEKVHQHLTELLSESRAKQAVIDAAHEAERLK
VDAAMADVIEVVDQLAVVASPTIAVANDPSGALPELKYARAVTAQAIEEVVIPYVPVEHL
VYKEADPTEAVEAVDPDRFFEASYTTTLEQMIAHVVAEEGPVLDTALARRIARAHGWVRT
GSRIRDRVDQIARTRFRFHEEEQAGTFFWPDHLGSDSNVAFRRPGDDAIRPLGEICLPEL
GALVDEMTKHGHVGEGLVYAVAKEAGVSKLAHAGRQRIEKAIRRFDE