Protein Info for PP_3210 in Pseudomonas putida KT2440

Annotation: ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 65 to 92 (28 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 195 to 221 (27 residues), see Phobius details amino acids 232 to 255 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 80 to 255 (176 residues), 89.8 bits, see alignment E=9.9e-30

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to ppu:PP_3210)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, transmembrane component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88HZ2 at UniProt or InterPro

Protein Sequence (267 amino acids)

>PP_3210 ABC transporter, permease protein (Pseudomonas putida KT2440)
MSRPSTPWLRHPSVLRIVSPLLVGALLLGVWQLACIAWKVPVYLVPSPADIGRTLVADGP
MLLGALWMTLKITFLSFALAVVIGTLAAFVFVQSRVVEASLFPYAILLQVTPVVAIAPLI
IIWCSDTTLALVICATLVAIFPIIANTVLGLRSVNPGLLNLFHLNRASRWQVLLRLRIPS
ALPCFFAGLRIASGLALIGAVVAEFVAGTGGTGAGLAYQILQAGFQLNIPRLFAALVLIA
LTGVALFSLMALLARLSLRHWHESELG